RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SCAMP4Q969E2 229 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 SMOQ99835 787 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 GPR35Q9HC97 309 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 SIDT1Q9NXL6 827 aaKnown RBP4.25□□□□□ -1.73
VPS50-216ENST00000484954 SPEF1Q9Y4P9 236 aa4.25□□□□□ -1.73
VPS50-216ENST00000484954 WDR27A2RRH5 827 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 MPPED1O15442 326 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 IL33O95760 270 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 ANXA1P04083 346 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 RPLP2P05387 115 aaKnown RBP4.24□□□□□ -1.73
VPS50-216ENST00000484954 CYP2C19P33261 490 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 PIK3CGP48736 1102 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 HK3P52790 923 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 PROK1P58294 105 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 HABP2Q14520 560 aaPredicted RBP4.24□□□□□ -1.73
VPS50-216ENST00000484954 KIF22Q14807 665 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 ZBTB46Q86UZ6 589 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 FAM9AQ8IZU1 332 aaPredicted RBP4.24□□□□□ -1.73
VPS50-216ENST00000484954 PSD4Q8NDX1 1056 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 ZNF384Q8TF68 577 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 STAG1Q8WVM7 1258 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 TNPO1Q92973 898 aaKnown RBP4.24□□□□□ -1.73
VPS50-216ENST00000484954 CHMP4CQ96CF2 233 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 HSPBAP1Q96EW2 488 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 TINAGL1Q9GZM7 467 aaPredicted RBP4.24□□□□□ -1.73
VPS50-216ENST00000484954 MRPL46Q9H2W6 279 aaKnown RBP4.24□□□□□ -1.73
VPS50-216ENST00000484954 MAN1C1Q9NR34 630 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 IP6K2Q9UHH9 426 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 ST3GAL5Q9UNP4 418 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 NEU2Q9Y3R4 380 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 PCDHA1Q9Y5I3 950 aa4.24□□□□□ -1.73
VPS50-216ENST00000484954 ADGRA2Q96PE1 1338 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 LINC00473A8K010 186 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 PDHA1P08559 390 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 GNAI3P08754 354 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 RARBP10826 455 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 NDUFV1P49821 464 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 NEK2P51955 445 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 ELLP55199 621 aaPredicted RBP4.23□□□□□ -1.73
VPS50-216ENST00000484954 GNAI1P63096 354 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 HLXQ14774 488 aaPredicted RBP4.23□□□□□ -1.73
VPS50-216ENST00000484954 PPP1R32Q7Z5V6 425 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 AOPEPQ8N6M6 819 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 B3GALNT2Q8NCR0 500 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 ZCRB1Q8TBF4 217 aaKnown RBP4.23□□□□□ -1.73
VPS50-216ENST00000484954 HOOK2Q96ED9 719 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 SPATA5L1Q9BVQ7 753 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 LMBRD1Q9NUN5 540 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 RLIMQ9NVW2 624 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 CFAP97Q9P2B7 532 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 SLC17A6Q9P2U8 582 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 ARPP21Q9UBL0 812 aaPredicted RBP4.23□□□□□ -1.73
VPS50-216ENST00000484954 POLHQ9Y253 713 aa4.23□□□□□ -1.73
VPS50-216ENST00000484954 A0A0B4J269 797 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 ANKRD62A6NC57 917 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 E7ENX8 843 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 F5H697 171 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 M0QYG6 137 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 RBMXL2O75526 392 aaKnown RBP4.22□□□□□ -1.73
VPS50-216ENST00000484954 ALDH2P05091 517 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 PF4V1P10720 104 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 TYRP14679 529 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 HDCP19113 662 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 KRTAP5-9P26371 169 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 ITPKBP27987 946 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 GRIA3P42263 894 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 TAP2Q03519 686 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 EXOSC9Q06265 439 aaKnown RBP4.22□□□□□ -1.73
VPS50-216ENST00000484954 TUBB3Q13509 450 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 ZNF267Q14586 743 aaPredicted RBP4.22□□□□□ -1.73
VPS50-216ENST00000484954 PTPRRQ15256 657 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 PGS1Q32NB8 556 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 RBM20Q5T481 1227 aaKnown RBP4.22□□□□□ -1.73
VPS50-216ENST00000484954 VPS53Q5VIR6 699 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 USP37Q86T82 979 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 PLBD2Q8NHP8 589 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 MVB12AQ96EY5 273 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 CNPPD1Q9BV87 410 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 BRINP2Q9C0B6 783 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 AMBRA1Q9C0C7 1298 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 WDCPQ9H6R7 721 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 CPNE5Q9HCH3 593 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 AASDHPPTQ9NRN7 309 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 DKK3Q9UBP4 350 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 FEZ2Q9UHY8 353 aaPredicted RBP4.22□□□□□ -1.73
VPS50-216ENST00000484954 ADAM21Q9UKJ8 722 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 FRMD4BQ9Y2L6 1034 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 NOP58Q9Y2X3 529 aaKnown RBP4.22□□□□□ -1.73
VPS50-216ENST00000484954 NR2E3Q9Y5X4 410 aa4.22□□□□□ -1.73
VPS50-216ENST00000484954 SLC16A6O15403 523 aa4.21□□□□□ -1.74
VPS50-216ENST00000484954 DTNBO60941 627 aa4.21□□□□□ -1.74
VPS50-216ENST00000484954 ABLIM3O94929 683 aa4.21□□□□□ -1.74
VPS50-216ENST00000484954 FTH1P19P0C7X4 201 aa4.21□□□□□ -1.74
VPS50-216ENST00000484954 PCSK6P29122 969 aa4.21□□□□□ -1.74
VPS50-216ENST00000484954 ZNF134P52741 427 aa4.21□□□□□ -1.74
VPS50-216ENST00000484954 NKX6-1P78426 367 aaPredicted RBP4.21□□□□□ -1.74
VPS50-216ENST00000484954 TCF15Q12870 199 aa4.21□□□□□ -1.74
VPS50-216ENST00000484954 PLS1Q14651 629 aa4.21□□□□□ -1.74
VPS50-216ENST00000484954 NBPF8Q3BBV2 869 aa4.21□□□□□ -1.74
VPS50-216ENST00000484954 AKNAD1Q5T1N1 836 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms