RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 AMNQ9BXJ7 453 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 NYXQ9GZU5 481 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 HSPBP1Q9NZL4 362 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 SEL1LQ9UBV2 794 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 MTO1Q9Y2Z2 717 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 HNRNPRO43390 633 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 USP46P62068 366 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 AP2B1P63010 937 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 LMNB2Q03252 620 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 KLF1Q13351 362 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 C1orf220Q5T0J3 134 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 SLFN13Q68D06 897 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 MARK2Q7KZI7 788 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 RELL1Q8IUW5 271 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 SCUBE1Q8IWY4 988 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 XXYLT1Q8NBI6 393 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 SHC3Q92529 594 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 TOPORSQ9NS56 1045 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 PPM1HQ9ULR3 514 aa19.77■□□□□ 0.76
CCDC88B-207ENST00000479965 IGKV6D-41A0A0C4DH26 115 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 CCDC160A6NGH7 325 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 A8MXQ7 604 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 SREBF1P36956 1147 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 SLC1A1P43005 524 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 GAD2Q05329 585 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 FBXO11Q86XK2 927 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 RBM15BQ8NDT2 890 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 PYROXD1Q8WU10 500 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 AZIN2Q96A70 460 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 VTI1AQ96AJ9 217 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 ACSF2Q96CM8 615 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 MARCOQ9UEW3 520 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 IRS2Q9Y4H2 1338 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 KCNQ2O43526 872 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 LPXNO60711 386 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 GAS7O60861 476 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 SLC18A1P54219 525 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 C3orf62Q6ZUJ4 267 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 OTOP1Q7RTM1 612 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 SKA1Q96BD8 255 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 PAFAH2Q99487 392 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 C11orf70Q9BRQ4 267 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 KCNK13Q9HB14 408 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 STK24Q9Y6E0 443 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 ARFGEF1Q9Y6D6 1849 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 SGK1O00141 431 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 GYS1P13807 737 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 GABPAQ06546 454 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 SPATA24Q86W54 205 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 CRYGNQ8WXF5 182 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 PANX3Q96QZ0 392 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 RANBP17Q9H2T7 1088 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 C10orf88Q9H8K7 445 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 DAGLAQ9Y4D2 1042 aa19.76■□□□□ 0.75
CCDC88B-207ENST00000479965 OR6B1O95007 311 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 CLEC16AQ2KHT3 1053 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 OLFML2BQ68BL8 750 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 RAPH1Q70E73 1250 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 CBWD2Q8IUF1 395 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 RHOT1Q8IXI2 618 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 MCOLN2Q8IZK6 566 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 HIPK4Q8NE63 616 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 DNAJC1Q96KC8 554 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 ZBTB21Q9ULJ3 1066 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 ROBO1Q9Y6N7 1651 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 STK10O94804 968 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 CFBP00751 764 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 HARSP12081 509 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 TM4SF1P30408 202 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 ADSSP30520 456 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 MYBPC3Q14896 1274 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 MTBPQ96DY7 904 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 TMEM121Q9BTD3 319 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 DNAAF2Q9NVR5 837 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 PHF24Q9UPV7 400 aa19.75■□□□□ 0.75
CCDC88B-207ENST00000479965 ARHGAP42A6NI28 874 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 SHMT1P34896 483 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 NSFP46459 744 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 SATL1Q86VE3 508 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 PYDC1Q8WXC3 89 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 MPP4Q96JB8 637 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 NT5C1BQ96P26 610 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 NACC1Q96RE7 527 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 MMADHCQ9H3L0 296 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 SMYD3Q9H7B4 428 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 SLC24A2Q9UI40 661 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 COMMD3-BMI1R4GMX3 469 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 MYH14Q7Z406 1995 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 MT-ND3P03897 115 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 INHBCP55103 352 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 GPX6P59796 221 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 MAP7Q14244 749 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 HIF1AQ16665 826 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 RHPN2Q8IUC4 686 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 SLF2Q8IX21 1173 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 TAS1R2Q8TE23 839 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 OLFM3Q96PB7 478 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 TUFT1Q9NNX1 390 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 GINM1Q9NU53 330 aa19.74■□□□□ 0.75
CCDC88B-207ENST00000479965 RPS6KL1Q9Y6S9 549 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms