RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ESYT2A0FGR8 921 aa14.19□□□□□ -0.14
USP42-206ENST00000479544 PYGBP11216 843 aa14.19□□□□□ -0.14
USP42-206ENST00000479544 ZCCHC23Q6ZST2 131 aa14.19□□□□□ -0.14
USP42-206ENST00000479544 SCUBE1Q8IWY4 988 aa14.19□□□□□ -0.14
USP42-206ENST00000479544 HES6Q96HZ4 224 aa14.19□□□□□ -0.14
USP42-206ENST00000479544 PAFAH2Q99487 392 aa14.19□□□□□ -0.14
USP42-206ENST00000479544 MTO1Q9Y2Z2 717 aaKnown RBP14.19□□□□□ -0.14
USP42-206ENST00000479544 FCHO1O14526 889 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 P4HBP07237 508 aaKnown RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 SOX10P56693 466 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 GEMIN4P57678 1058 aaKnown RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 ARHGAP22Q7Z5H3 698 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 SULF1Q8IWU6 871 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 E2F7Q96AV8 911 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 CENPTQ96BT3 561 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 TMA16Q96EY4 203 aaKnown RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 WHRNQ9P202 907 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 IP6K2Q9UHH9 426 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 APPL1Q9UKG1 709 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 EML1O00423 815 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 GSTT1P30711 240 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 SLC34A1Q06495 639 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 NFIAQ12857 509 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 C1orf131Q8NDD1 294 aaKnown RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 RAVER2Q9HCJ3 691 aaKnown RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 GABBR1Q9UBS5 961 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 CORO1CQ9ULV4 474 aaPredicted RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 KCNN4O15554 427 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 NT5C2P49902 561 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 BCAR1P56945 870 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 ORC1Q13415 861 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 SWSAP1Q6NVH7 229 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 FAM43BQ6ZT52 329 aaPredicted RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 NOP9Q86U38 636 aaKnown RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 ATP6V0A1Q93050 837 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 THEGQ9P2T0 379 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 MYH8P13535 1937 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 GOLGA4Q13439 2230 aaKnown RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 RNF103-CHMP3A0A140T963 221 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 GMNNO75496 209 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 CSDE1O75534 798 aaKnown RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 IFRD2Q12894 506 aaPredicted RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 SLC12A1Q13621 1099 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 TCHHL1Q5QJ38 904 aaPredicted RBP14.18□□□□□ -0.14
USP42-206ENST00000479544 TMEM179Q6ZVK1 233 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 SPATA18Q8TC71 538 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 RMDN3Q96TC7 470 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 KLC2Q9H0B6 622 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 PDP2Q9P2J9 529 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 TLK1Q9UKI8 766 aa14.18□□□□□ -0.14
USP42-206ENST00000479544 NUDT17P0C025 328 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 FOXD4Q12950 439 aaPredicted RBP14.17□□□□□ -0.14
USP42-206ENST00000479544 LACTB2Q53H82 288 aaPredicted RBP14.17□□□□□ -0.14
USP42-206ENST00000479544 JADE1Q6IE81 842 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 C16orf87Q6PH81 154 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 ARHGAP27Q6ZUM4 889 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 CCNJLQ8IV13 435 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 EXT2Q93063 718 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 CCDC97Q96F63 343 aaPredicted RBP14.17□□□□□ -0.14
USP42-206ENST00000479544 ADPGKQ9BRR6 497 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 COA1Q9GZY4 146 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 PARVAQ9NVD7 372 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 HESX1Q9UBX0 185 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 DNPEPQ9ULA0 475 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 UBE4BO95155 1302 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 RIC1Q4ADV7 1423 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 A0A1W2PPM1 405 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 SPDYE5A6NIY4 337 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 CRKP46108 304 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 ANKRD20A4Q4UJ75 823 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 ACAD10Q6JQN1 1059 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 ZBTB46Q86UZ6 589 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 CDR2LQ86X02 465 aaPredicted RBP14.17□□□□□ -0.14
USP42-206ENST00000479544 AGAP3Q96P47 875 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 SERPINI1Q99574 410 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 CAAP1Q9H8G2 361 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 RBAKQ9NYW8 714 aaPredicted RBP14.17□□□□□ -0.14
USP42-206ENST00000479544 FAM86B1E9PN63 330 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 GIPC1O14908 333 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 FAM86B2P0C5J1 330 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 YWHABP31946 246 aaKnown RBP14.17□□□□□ -0.14
USP42-206ENST00000479544 TMEM119Q4V9L6 283 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 TTC27Q6P3X3 843 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 ZNF720Q7Z2F6 126 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 NLRP4Q96MN2 994 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 BTBD10Q9BSF8 475 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 MOV10L1Q9BXT6 1211 aaKnown RBP14.17□□□□□ -0.14
USP42-206ENST00000479544 FBXO28Q9NVF7 368 aa14.17□□□□□ -0.14
USP42-206ENST00000479544 WARS2Q9UGM6 360 aaKnown RBP14.17□□□□□ -0.14
USP42-206ENST00000479544 TPST1O60507 370 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 KRT3P12035 628 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 FAM102AQ5T9C2 384 aaPredicted RBP14.16□□□□□ -0.14
USP42-206ENST00000479544 LAYNQ6UX15 382 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 RYBPQ8N488 228 aaPredicted RBP14.16□□□□□ -0.14
USP42-206ENST00000479544 LRRC15Q8TF66 581 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 HDAC11Q96DB2 347 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 PIH1D1Q9NWS0 290 aaKnown RBP14.16□□□□□ -0.14
USP42-206ENST00000479544 NMRK1Q9NWW6 199 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 ARHGAP26Q9UNA1 814 aa14.16□□□□□ -0.14
USP42-206ENST00000479544 ARP10275 920 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms