RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MYL7Q01449 175 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 PAK1Q13153 545 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 GPR17Q13304 367 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 PLD1Q13393 1074 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 BIRC3Q13489 604 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 TRPC3Q13507 836 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 ZACNQ401N2 412 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 PPM1LQ5SGD2 360 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 TDRD10Q5VZ19 366 aaKnown RBP12.74□□□□□ -0.37
VPS52-213ENST00000461743 PDCL2Q8N4E4 241 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 SLC7A14Q8TBB6 771 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 PLEKHO2Q8TD55 490 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 TAF4BQ92750 862 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 L1RE1Q9UN81 338 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 USTQ9Y2C2 406 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 SNX9Q9Y5X1 595 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 HELZP42694 1942 aaKnown RBP12.74□□□□□ -0.37
VPS52-213ENST00000461743 CLUHO75153 1309 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 ANAPC1Q9H1A4 1944 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 CCDC195A0A1B0GUA6 201 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 LOC730098B7Z3J9 87 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 PPP1R3GB7ZBB8 358 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 PHACTR2O75167 634 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 C4BPAP04003 597 aaKnown RBP12.73□□□□□ -0.37
VPS52-213ENST00000461743 P4HA1P13674 534 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 BMP6P22004 513 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 PCSK1P29120 753 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 TNNC1P63316 161 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 TSPY1Q01534 308 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 NCOA4Q13772 614 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 CAMK4Q16566 473 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 ZNF699Q32M78 642 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 WSCD1Q658N2 575 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 ANKRD40Q6AI12 368 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 TTI2Q6NXR4 508 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 TMC5Q6UXY8 1006 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 DCP1BQ8IZD4 617 aaKnown RBP12.73□□□□□ -0.37
VPS52-213ENST00000461743 ADGRF2Q8IZF7 708 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 NELFBQ8WX92 580 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 SMG7Q92540 1137 aaKnown RBP12.73□□□□□ -0.37
VPS52-213ENST00000461743 ZNF516Q92618 1163 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 ZNF707Q96C28 371 aaPredicted RBP12.73□□□□□ -0.37
VPS52-213ENST00000461743 ACBD6Q9BR61 282 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 COL25A1Q9BXS0 654 aaPredicted RBP12.73□□□□□ -0.37
VPS52-213ENST00000461743 IMPG2Q9BZV3 1241 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 ZCWPW1Q9H0M4 648 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 METTL14Q9HCE5 456 aaKnown RBP12.73□□□□□ -0.37
VPS52-213ENST00000461743 TMEM8AQ9HCN3 771 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 DACH1Q9UI36 760 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 CTNND2Q9UQB3 1225 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 TIMM13Q9Y5L4 95 aaPredicted RBP12.73□□□□□ -0.37
VPS52-213ENST00000461743 MYO16Q9Y6X6 1858 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 TRIOO75962 3097 aa12.73□□□□□ -0.37
VPS52-213ENST00000461743 TRIM49BA6NDI0 452 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 TULP1O00294 542 aaPredicted RBP12.72□□□□□ -0.37
VPS52-213ENST00000461743 BIN1O00499 593 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 PRRG1O14668 218 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 GABRDO14764 452 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 TACC1O75410 805 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 RFPL2O75678 378 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 FGFR1OPO95684 399 aaKnown RBP12.72□□□□□ -0.37
VPS52-213ENST00000461743 GNA14O95837 355 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 LRG1P02750 347 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 CD44P16070 742 aaKnown RBP12.72□□□□□ -0.37
VPS52-213ENST00000461743 NFE2Q16621 373 aaPredicted RBP12.72□□□□□ -0.37
VPS52-213ENST00000461743 CT47A1Q5JQC4 288 aaPredicted RBP12.72□□□□□ -0.37
VPS52-213ENST00000461743 C1orf220Q5T0J3 134 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 FRMD5Q7Z6J6 570 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 C12orf76Q8N812 135 aaPredicted RBP12.72□□□□□ -0.37
VPS52-213ENST00000461743 MLKLQ8NB16 471 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 OR10T2Q8NGX3 314 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 SPPL2BQ8TCT7 592 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 UBE2Q2Q8WVN8 375 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 FAXDC2Q96IV6 333 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 FAM84AQ96KN4 292 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 RTP3Q9BQQ7 232 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 XYLT2Q9H1B5 865 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 POMKQ9H5K3 350 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 FAM124BQ9H5Z6 455 aaPredicted RBP12.72□□□□□ -0.37
VPS52-213ENST00000461743 WDR6Q9NNW5 1121 aaKnown RBP12.72□□□□□ -0.37
VPS52-213ENST00000461743 AVENQ9NQS1 362 aaPredicted RBP12.72□□□□□ -0.37
VPS52-213ENST00000461743 INSL5Q9Y5Q6 135 aa12.72□□□□□ -0.37
VPS52-213ENST00000461743 MTMR11A4FU01 709 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 ASS1P00966 412 aaKnown RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 SPATA31D3P0C874 917 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 WARSP23381 471 aaKnown RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 PIK3CAP42336 1068 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 MXI1P50539 228 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 PMS1P54277 932 aaKnown RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 MARSP56192 900 aaKnown RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 ARPP19P56211 112 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 DLG4P78352 724 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 ADCY1Q08828 1119 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 MAPRE1Q15691 268 aaKnown RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 SOWAHAQ2M3V2 549 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 SGSM1Q2NKQ1 1148 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 ZNF667Q5HYK9 610 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 INTS6LQ5JSJ4 861 aaKnown RBP12.71□□□□□ -0.37
VPS52-213ENST00000461743 KRT39Q6A163 491 aa12.71□□□□□ -0.37
VPS52-213ENST00000461743 KLHL10Q6JEL2 608 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms