RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ZNF132P52740 706 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 KCNJ2P63252 427 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 GRM1Q13255 1194 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 PIGHQ14442 188 aaPredicted RBP11.93□□□□□ -0.5
USP4-205ENST00000431357 DAB2IPQ5VWQ8 1189 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 CYP4F22Q6NT55 531 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 SPOCD1Q6ZMY3 1216 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 ASRGL1Q7L266 308 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 PCGF5Q86SE9 256 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 ZNF606Q8WXB4 792 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 NKD2Q969F2 451 aaPredicted RBP11.93□□□□□ -0.5
USP4-205ENST00000431357 RAB3IPQ96QF0 476 aaPredicted RBP11.93□□□□□ -0.5
USP4-205ENST00000431357 FRMD8P1Q9BZ68 369 aaPredicted RBP11.93□□□□□ -0.5
USP4-205ENST00000431357 AS3MTQ9HBK9 375 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 TXLNGQ9NUQ3 528 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 DNPEPQ9ULA0 475 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 SHOC2Q9UQ13 582 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 RIPK3Q9Y572 518 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 PTPRJQ12913 1337 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 RGS20O76081 388 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 ITGAVP06756 1048 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 ARL2P36404 184 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 ALDH5A1P51649 535 aaPredicted RBP11.93□□□□□ -0.5
USP4-205ENST00000431357 ARSEP51690 589 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 VCPP55072 806 aaKnown RBP11.93□□□□□ -0.5
USP4-205ENST00000431357 WNT7BP56706 349 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 DGKZQ13574 1117 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 NCOA4Q13772 614 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 SETDB1Q15047 1291 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 TMEM63BQ5T3F8 832 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 ZFYVE27Q5T4F4 411 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 SNRNP48Q6IEG0 339 aaKnown RBP11.93□□□□□ -0.5
USP4-205ENST00000431357 CGB2Q6NT52 195 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 CENPUQ71F23 418 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 UBR7Q8N806 425 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 TMEM35BQ8NCS4 154 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 REPS2Q8NFH8 660 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 DENND1AQ8TEH3 1009 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 MIEF2Q96C03 454 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 SMC6Q96SB8 1091 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 FAM118BQ9BPY3 351 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 TRABDQ9H4I3 376 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 DHX33Q9H6R0 707 aaKnown RBP11.93□□□□□ -0.5
USP4-205ENST00000431357 FETUBQ9UGM5 382 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 GGT7Q9UJ14 662 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 NUB1Q9Y5A7 615 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 COL4A5P29400 1685 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 ZNF541Q9H0D2 1346 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 CNTNAP2Q9UHC6 1331 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 WDR81Q562E7 1941 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 ATG7O95352 703 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 OATP04181 439 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 GLRA2P23416 452 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 FOXN2P32314 431 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 BACE1P56817 501 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 WDR4P57081 412 aaKnown RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 LACTBP83111 547 aaPredicted RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 CXCL9Q07325 125 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 GPS1Q13098 491 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 KAZNQ674X7 775 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 DNAJC24Q6P3W2 148 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 TLDC1Q6P9B6 456 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 MFSD7Q6UXD7 560 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 NIPA2Q8N8Q9 360 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 RSRC1Q96IZ7 334 aaKnown RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 FAM84AQ96KN4 292 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 HAPLN2Q9GZV7 340 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 PCDH9Q9HC56 1237 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 SSU72Q9NP77 194 aaKnown RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 ZNF302Q9NR11 478 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 NOP53Q9NZM5 478 aaKnown RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 EFR3BQ9Y2G0 817 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 MAFBQ9Y5Q3 323 aaPredicted RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 USH1CQ9Y6N9 552 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 ADGRA2Q96PE1 1338 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 hCG_1818297A0A087WSY0 165 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 TCRBV5S1A1TA0A578 114 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 LRRIQ4A6NIV6 560 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 FOXO6A8MYZ6 492 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 WFS1O76024 890 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 UNC5CO95185 931 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 KRT10P13645 584 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 PECAM1P16284 738 aaPredicted RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 ATF7P17544 494 aaPredicted RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 GCAP28676 217 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 ALDH3A1P30838 453 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 RFC5P40937 340 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 MSH2P43246 934 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 YARSP54577 528 aaKnown RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 OASLQ15646 514 aaKnown RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 TFDP3Q5H9I0 405 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 CIAPIN1Q6FI81 312 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 DCUN1D2Q6PH85 259 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 ECHDC2Q86YB7 292 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 ASAP3Q8TDY4 903 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 SLC7A3Q8WY07 619 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 TMEM143Q96AN5 459 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 TBC1D31Q96DN5 1066 aa11.92□□□□□ -0.5
USP4-205ENST00000431357 ZBTB45Q96K62 511 aaPredicted RBP11.92□□□□□ -0.5
USP4-205ENST00000431357 RMDN2Q96LZ7 410 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms