RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 DRAP1Q14919 205 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 XKR3Q5GH77 459 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 KDELC2Q7Z4H8 507 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 SYTL1Q8IYJ3 562 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CNOT7Q9UIV1 285 aaKnown RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 TRMT6Q9UJA5 497 aaKnown RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 DYRK1BQ9Y463 629 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CAMSAP1Q5T5Y3 1602 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ANXA9O76027 345 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 NFICP08651 508 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 VSNL1P62760 191 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 GNASQ5JWF2 1037 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 TIGD7Q6NT04 549 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 FAM117BQ6P1L5 589 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ZSCAN18Q8TBC5 510 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CSGALNACT1Q8TDX6 532 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 CCDC126Q96EE4 140 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 ADGRE3Q9BY15 652 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 BARHL2Q9NY43 387 aa7.16□□□□□ -1.26
SCN1A-204ENST00000423058 PVALEFA0A1B0GWK0 134 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 CFAP73A6NFT4 308 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 P4HA2O15460 535 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 GPC1P35052 558 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 KCNK10P57789 538 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 UBE3AQ05086 875 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 STAT4Q14765 748 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 KRT31Q15323 416 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 PCSK7Q16549 785 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 TCEAL5Q5H9L2 206 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 HDDC2Q7Z4H3 204 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 C17orf53Q8N3J3 647 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 PCSK9Q8NBP7 692 aaKnown RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 RMND5AQ9H871 391 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 CD209Q9NNX6 404 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 AGAP1Q9UPQ3 857 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 EIF3LQ9Y262 564 aaKnown RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 LRRC14BA6NHZ5 514 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF839A8K0R7 811 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 F5H6K3 240 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 SMAPO00193 183 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 KLRC3Q07444 240 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 FAM83EQ2M2I3 478 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 PUS3Q9BZE2 481 aaKnown RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 C20orf96Q9NUD7 363 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 PRMT7Q9NVM4 692 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 WWOXQ9NZC7 414 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 HSPBP1Q9NZL4 362 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 AFF2P51816 1311 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 F5H5T6 163 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 C2CD2LO14523 706 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 PEX1O43933 1283 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 ENO2P09104 434 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 SPRP35270 261 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 BEND6Q5SZJ8 279 aaPredicted RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 CDK20Q8IZL9 346 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 NSUN7Q8NE18 718 aaKnown RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 CYGBQ8WWM9 190 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 CNBD2Q96M20 576 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 SERPINB12Q96P63 405 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 LIMA1Q9UHB6 759 aaKnown RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 SRP68Q9UHB9 627 aaKnown RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 SMG5Q9UPR3 1016 aaKnown RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 CASZ1Q86V15 1759 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 GON4LQ3T8J9 2241 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 EMSYQ7Z589 1322 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 H3BMM5 538 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 IFNA14P01570 189 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 PEX6Q13608 980 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 EDRF1Q3B7T1 1238 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 VSTM4Q8IW00 320 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 SRBD1Q8N5C6 995 aaKnown RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 TMC2Q8TDI7 906 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 VPS33AQ96AX1 596 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 TUBGCP3Q96CW5 907 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 OSBPL9Q96SU4 736 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 APOL5Q9BWW9 433 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 CAPN10Q9HC96 672 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 TMEM51Q9NW97 253 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 XPO7Q9UIA9 1087 aaKnown RBP7.15□□□□□ -1.26
SCN1A-204ENST00000423058 VPS51Q9UID3 782 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 DCTN4Q9UJW0 460 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 TMCC3Q9ULS5 477 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 CDY2AQ9Y6F7 541 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 CDY1Q9Y6F8 540 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 TET3O43151 1660 aa7.15□□□□□ -1.26
SCN1A-204ENST00000423058 NUMA1Q14980 2115 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 HBP1O60381 514 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CCDC130P13994 396 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 PPP2R1BP30154 601 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 MMP14P50281 582 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CCT8P50990 548 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 WDR72Q3MJ13 1102 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 KLHL24Q6TFL4 600 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 BTNL9Q6UXG8 535 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CYP4Z2PQ8N1L4 340 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 ECSITQ9BQ95 431 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 NEK6Q9HC98 313 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 MINPP1Q9UNW1 487 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 MYH9P35579 1960 aaKnown RBP7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CCL15-CCL14A0A0B4J2E2 113 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms