RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 PRDX5P30044 214 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 CTNNA1P35221 906 aaKnown RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 ADMP35318 185 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 CCR9P51686 369 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 CHRNDQ07001 517 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 MAN2A1Q16706 1144 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 HLA-DQA1Q5Y7H0 255 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 ABHD15Q6UXT9 468 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 RNF111Q6ZNA4 994 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 C22orf34Q6ZV56 151 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 RSPH3Q86UC2 560 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 BRIX1Q8TDN6 353 aaKnown RBP5.69□□□□□ -1.5
VPS13A-207ENST00000419472 SH3KBP1Q96B97 665 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 FOXB1Q99853 325 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 AMNQ9BXJ7 453 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 SENP2Q9HC62 589 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 SLAMF7Q9NQ25 335 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 CNNM1Q9NRU3 951 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 TM7SF3Q9NS93 570 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 RBPJLQ9UBG7 517 aa5.69□□□□□ -1.5
VPS13A-207ENST00000419472 FAM170AA1A519 330 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 F5H0A9 414 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 WNT10BO00744 389 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 AMY1AP04745 511 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 ITGA2BP08514 1039 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 PORP16435 677 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 CARSP49589 748 aaKnown RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 CLNS1AP54105 237 aaKnown RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 HERVK_113P62684 666 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 RAC1P63000 192 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 UBE3CQ15386 1083 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 AOC3Q16853 763 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 ZNF827Q17R98 1081 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 SLC30A6Q6NXT4 461 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 DNAJB7Q7Z6W7 309 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 ZMIZ2Q8NF64 920 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 OR56A3Q8NH54 315 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 CEP70Q8NHQ1 597 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 SSH3Q8TE77 659 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 CREB3L4Q8TEY5 395 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 ANP32BQ92688 251 aaKnown RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 SUCLG2Q96I99 432 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 CHST8Q9H2A9 424 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 EPS8L2Q9H6S3 715 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 ACAD9Q9H845 621 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 KNDC1Q76NI1 1749 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 A0A0A6YYK5 440 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 GNAT3A8MTJ3 354 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 PTP4A3O75365 173 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 ADRB2P07550 413 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 TNNT2P45379 298 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 NAP1L1P55209 391 aaKnown RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 RIPK4P57078 832 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 KIF22Q14807 665 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 NDUFAF2Q8N183 169 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 TSPYL6Q8N831 410 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 OR6B3Q8NGW1 331 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 CDHR1Q96JP9 859 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 SOX7Q9BT81 388 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 SLC39A2Q9NP94 309 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 SERHLQ9NQF3 203 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 PRDM8Q9NQV8 689 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 RNF123Q5XPI4 1314 aa5.68□□□□□ -1.5
VPS13A-207ENST00000419472 MYBBP1AQ9BQG0 1328 aaKnown RBP5.68□□□□□ -1.5
VPS13A-207ENST00000419472 CLCA1A8K7I4 914 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 OIP5O43482 229 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ACTL6BO94805 426 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ARIH2O95376 493 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 HSPA4LO95757 839 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 KRT76Q01546 638 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ASIC2Q16515 512 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ZMYM1Q5SVZ6 1142 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 TMTC4Q5T4D3 741 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 RAP1GAP2Q684P5 730 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 R3HCC1LQ7Z5L2 792 aaKnown RBP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 MPP5Q8N3R9 675 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 VGLL2Q8N8G2 317 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ARL10Q8N8L6 244 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ADAMTS15Q8TE58 950 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 THAP4Q8WY91 577 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 TWNKQ96RR1 684 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 YME1L1Q96TA2 773 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 MXD3Q9BW11 206 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 YIPF2Q9BWQ6 316 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 SEPSECSQ9HD40 501 aaKnown RBP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 NECTIN3Q9NQS3 549 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 PCDHGB5Q9Y5G0 923 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ALKQ9UM73 1620 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 DCCP43146 1447 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ADAMTS13Q76LX8 1427 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 TCRBV5S2A0A599 114 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 F2RL2O00254 374 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 SGSM2O43147 1006 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ADCY6O43306 1168 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 LETM1O95202 739 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ADAMTS2O95450 1211 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 ABHD16AO95870 558 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 APOA4P06727 396 aa5.67□□□□□ -1.5
VPS13A-207ENST00000419472 YY1P25490 414 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms