RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 TPCN1Q9ULQ1 816 aa3.28□□□□□ -1.88
VPS41-206ENST00000418457 FZD1Q9UP38 647 aa3.28□□□□□ -1.88
VPS41-206ENST00000418457 AGAP1Q9UPQ3 857 aa3.28□□□□□ -1.88
VPS41-206ENST00000418457 MAP3K2Q9Y2U5 619 aa3.28□□□□□ -1.88
VPS41-206ENST00000418457 MED16Q9Y2X0 877 aa3.28□□□□□ -1.88
VPS41-206ENST00000418457 REXO2Q9Y3B8 237 aaKnown RBP3.28□□□□□ -1.88
VPS41-206ENST00000418457 NEU2Q9Y3R4 380 aa3.28□□□□□ -1.88
VPS41-206ENST00000418457 NOX1Q9Y5S8 564 aa3.28□□□□□ -1.88
VPS41-206ENST00000418457 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.28□□□□□ -1.88
VPS41-206ENST00000418457 PCF11O94913 1555 aaKnown RBP3.28□□□□□ -1.88
VPS41-206ENST00000418457 CCDC18Q5T9S5 1454 aa3.28□□□□□ -1.88
VPS41-206ENST00000418457 HFM1A2PYH4 1435 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 TONSLQ96HA7 1378 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 GCC2Q8IWJ2 1684 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 HECW1Q76N89 1606 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 PTPN23Q9H3S7 1636 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 CCDC195A0A1B0GUA6 201 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 TMEM200CA6NKL6 621 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 MARCH11A6NNE9 402 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 FRS3O43559 492 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 DNAJB5O75953 348 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 CDKL5O76039 1030 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 UNC5CO95185 931 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 KIF20AO95235 890 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 THP07101 528 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 TRIM27P14373 513 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 KCNA2P16389 499 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 DDX6P26196 483 aaKnown RBP eCLIP3.27□□□□□ -1.89
VPS41-206ENST00000418457 ZFP36P26651 326 aaKnown RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 PEX2P28328 305 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 SLC7A1P30825 629 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 BMPR1AP36894 532 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 KRTAP10-2P60368 255 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 CXADRP78310 365 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 PURAQ00577 322 aaKnown RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 RESTQ13127 1097 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 DDX10Q13206 875 aaKnown RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 SEMA5AQ13591 1074 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 POLD3Q15054 466 aaPredicted RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 ZXDCQ2QGD7 858 aaPredicted RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 COBLL1Q53SF7 1204 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 B3GNTL1Q67FW5 361 aaPredicted RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 CCSAPQ6IQ19 270 aaPredicted RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 TAPT1Q6NXT6 567 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 APOA5Q6Q788 366 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 KSR2Q6VAB6 950 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 ZNF783Q6ZMS7 281 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 CLNKQ7Z7G1 428 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 NSUN7Q8NE18 718 aaKnown RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 CPEB3Q8NE35 698 aaKnown RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 FAM46DQ8NEK8 389 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 OR6B3Q8NGW1 331 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 KBTBD7Q8WVZ9 684 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 ANKS1AQ92625 1134 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 RNF31Q96EP0 1072 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 SUCLG2Q96I99 432 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 BOD1Q96IK1 185 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 TRIB1Q96RU8 372 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 P2RX7Q99572 595 aaKnown RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 ZNF747Q9BV97 191 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 SARGQ9BW04 601 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 ALOXE3Q9BYJ1 711 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 TRIM54Q9BYV2 358 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 LRRC27Q9C0I9 530 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 BHMT2Q9H2M3 363 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 GALNT9Q9HCQ5 603 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 DDX21Q9NR30 783 aaKnown RBP eCLIP3.27□□□□□ -1.89
VPS41-206ENST00000418457 SLC2A4RGQ9NR83 387 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.27□□□□□ -1.89
VPS41-206ENST00000418457 PLEKHM1Q9Y4G2 1056 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 PCDHGB6Q9Y5F9 930 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 NCOA2Q15596 1464 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 FGD5Q6ZNL6 1462 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 MRC2Q9UBG0 1479 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 FMN1Q68DA7 1419 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 AKNAQ7Z591 1439 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 CASKIN1Q8WXD9 1431 aa3.27□□□□□ -1.89
VPS41-206ENST00000418457 ABCA5Q8WWZ7 1642 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 USP19O94966 1318 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 PRAMEF33A0A0G2JMD5 474 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 E7ENX8 843 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 TOR1BO14657 336 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 MATN3O15232 486 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 TBC1D4O60343 1298 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 LPXNO60711 386 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 PRAMEF10O60809 474 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 VPS4BO75351 444 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 ABHD16AO95870 558 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 FOSP01100 380 aaPredicted RBP3.26□□□□□ -1.89
VPS41-206ENST00000418457 MYL1P05976 194 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 GRPP07492 148 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 PIM1P11309 404 aaPredicted RBP3.26□□□□□ -1.89
VPS41-206ENST00000418457 MYF5P13349 255 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 BRAFP15056 766 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 EN2P19622 333 aaPredicted RBP3.26□□□□□ -1.89
VPS41-206ENST00000418457 MAKP20794 623 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 ARFIP2P53365 341 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 SUMO3P55854 103 aaPredicted RBP3.26□□□□□ -1.89
VPS41-206ENST00000418457 GUCY1B3Q02153 619 aa3.26□□□□□ -1.89
VPS41-206ENST00000418457 TAP2Q03519 686 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms