RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TRIML2Q8N7C3 387 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ATP6V0A1Q93050 837 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 RPS6KC1Q96S38 1066 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 P2RX7Q99572 595 aaKnown RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 MXRA8Q9BRK3 442 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 DDX18Q9NVP1 670 aaKnown RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 PCDHA2Q9Y5H9 948 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ENO1P06733 434 aaKnown RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 VCAM1P19320 739 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 BAATQ14032 418 aaPredicted RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 HIF1AQ16665 826 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ACAD10Q6JQN1 1059 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 MCF2L2Q86YR7 1114 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 RMDN2Q96LZ7 410 aa12.55□□□□□ -0.4
HMGB1-206ENST00000405805 POLR3FQ9H1D9 316 aaPredicted RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 ZNF70Q9UC06 446 aaPredicted RBP12.55□□□□□ -0.4
HMGB1-206ENST00000405805 NOP56O00567 594 aaKnown RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 RGL2O15211 777 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 DCTN3O75935 186 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 STAT4Q14765 748 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 COBLL1Q53SF7 1204 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 C7orf31Q8N865 590 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 IL31RAQ8NI17 732 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 SEMA4DQ92854 862 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 PPP1R36Q96LQ0 422 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 SERPINB12Q96P63 405 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 NUF2Q9BZD4 464 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 AGO2Q9UKV8 859 aaKnown RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 H0YGN5 161 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 HNRNPRO43390 633 aaKnown RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 ENTPD5O75356 428 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 RASSF9O75901 435 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 NPTX2P47972 431 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 RARRES1P49788 294 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 RPS6P62753 249 aaKnown RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 LMNB2Q03252 620 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 ANO5Q75V66 913 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 TEX9Q8N6V9 391 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 CASP10Q92851 521 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 SLC9A2Q9UBY0 812 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 NFS1Q9Y697 457 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 ASAP2O43150 1006 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 LPXNO60711 386 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 GGPS1O95749 300 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 ANXA13P27216 316 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 MMP13P45452 471 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 ATXN3P54252 364 aaPredicted RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 PSMC5P62195 406 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 ITIH4Q14624 930 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 TAF1BQ53T94 588 aaPredicted RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 ZNF572Q7Z3I7 529 aaPredicted RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 GPD1LQ8N335 351 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 RBBP8NLQ8NC74 664 aaPredicted RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 C1orf131Q8NDD1 294 aaKnown RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 ATXN7L3BQ96GX2 97 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 HSD17B14Q9BPX1 270 aa12.54□□□□□ -0.4
HMGB1-206ENST00000405805 WRAP73Q9P2S5 460 aaPredicted RBP12.54□□□□□ -0.4
HMGB1-206ENST00000405805 GTPBP10A4D1E9 387 aaKnown RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 CST8O60676 142 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ECHS1P30084 290 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 PSMD7P51665 324 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 DEFB132Q7Z7B7 95 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 CYP4X1Q8N118 509 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 FITM2Q8N6M3 262 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 EMC1Q8N766 993 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 FAF2Q96CS3 445 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ZBTB45Q96K62 511 aaPredicted RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ROPN1BQ9BZX4 212 aaPredicted RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 MYLK2Q9H1R3 596 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 MRPL46Q9H2W6 279 aaKnown RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ROPN1Q9HAT0 212 aaPredicted RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ZC4H2Q9NQZ6 224 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ARMCX1Q9P291 453 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 DNPEPQ9ULA0 475 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 TBX20Q9UMR3 447 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 RPTORQ8N122 1335 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 O00370 1275 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 MCF2LO15068 1137 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ASNSP08243 561 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ATP6V1B1P15313 513 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 CYLC2Q14093 348 aaPredicted RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ZNF772Q68DY9 489 aaPredicted RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 OR6B2Q6IFH4 312 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 ZDHHC24Q6UX98 284 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 FAXDC2Q96IV6 333 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 KREMEN1Q96MU8 473 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 FAM111AQ96PZ2 611 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 FHDC1Q9C0D6 1143 aaPredicted RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 MIS12Q9H081 205 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 HEY2Q9UBP5 337 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 NCF2P19878 526 aaPredicted RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 NCALDP61601 193 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 NFX1Q12986 1120 aaKnown RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 CWF19L1Q69YN2 538 aaKnown RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 CDAN1Q8IWY9 1227 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 FAM71DQ8N9W8 422 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.53□□□□□ -0.4
HMGB1-206ENST00000405805 DUOX1Q9NRD9 1551 aa12.53□□□□□ -0.4
HMGB1-206ENST00000405805 CSDE1O75534 798 aaKnown RBP12.52□□□□□ -0.4
HMGB1-206ENST00000405805 GTF2H1P32780 548 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms