RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 WARS2Q9UGM6 360 aaKnown RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 MRPL42Q9Y6G3 142 aaKnown RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 OSMRQ99650 979 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 SENP6Q9GZR1 1112 aaPredicted RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 TAF1DQ9H5J8 278 aaPredicted RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 KCND2Q9NZV8 630 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 SLC1A1P43005 524 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 ALDH18A1P54886 795 aaKnown RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 KRT72Q14CN4 511 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 DDI1Q8WTU0 396 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 SEPT8Q92599 483 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 STK33Q9BYT3 514 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 TMEM8AQ9HCN3 771 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 CHCHD3Q9NX63 227 aaKnown RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 ZNF263O14978 683 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 ZNF177Q13360 481 aaPredicted RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 NIF3L1Q9GZT8 377 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 TIMM13Q9Y5L4 95 aaPredicted RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 FHOD1Q9Y613 1164 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 MSH4O15457 936 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 LMNAP02545 664 aaKnown RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 BTN2A2Q8WVV5 523 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 MROH8Q9H579 483 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 STX18Q9P2W9 335 aaKnown RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 CDV3Q9UKY7 258 aaKnown RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 LZTS3O60299 673 aaPredicted RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 GCLCP48506 637 aaPredicted RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 SLC11A2P49281 568 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 CASP4P49662 377 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 ADGRF2Q8IZF7 708 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 C1orf131Q8NDD1 294 aaKnown RBP11.88□□□□□ -0.51
TTC28-201ENST00000397906 PPP1R13LQ8WUF5 828 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 CRLS1Q9UJA2 301 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 TBX3O15119 743 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 ALDH1A2O94788 518 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 SOX10P56693 466 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 CXCL9Q07325 125 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 DPYDQ12882 1025 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 STK4Q13043 487 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 SLC9A5Q14940 896 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 C2CD6Q53TS8 623 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 CIPCQ9C0C6 399 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 PCMTD2Q9NV79 361 aa11.88□□□□□ -0.51
TTC28-201ENST00000397906 NFIBO00712 420 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 MRPS31Q92665 395 aaKnown RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 BPIFA3Q9BQP9 254 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 TRIM51Q9BSJ1 452 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 SPATA16Q9BXB7 569 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 USP27XA6NNY8 438 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 SYNCRIPO60506 623 aaKnown RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 SLC9A1P19634 815 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 PNPLA4P41247 253 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 GALCP54803 685 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 EFEMP1Q12805 493 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 RIT2Q99578 217 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 THP07101 528 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 SKIP12755 728 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 EPHB2P29323 1055 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 MAP2K2P36507 400 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 FMR1Q06787 632 aaKnown RBP eCLIP11.87□□□□□ -0.51
TTC28-201ENST00000397906 PLCL1Q15111 1095 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 TRIML2Q8N7C3 387 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 MORC4Q8TE76 937 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 DNAJB3Q8WWF6 145 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 DACH2Q96NX9 599 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 RNF208Q9H0X6 261 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 NMRK2Q9NPI5 230 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 SP100P23497 879 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 ATXN3P54252 364 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 POLD3Q15054 466 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 AGPAT5Q9NUQ2 364 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 ZC3H7BQ9UGR2 993 aaKnown RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 PMPCBO75439 489 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 PTGISQ16647 500 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 C6orf10Q5SRN2 563 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 DDTLA6NHG4 134 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 F5H5T6 163 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 PNMA6AP0CW24 399 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 KLRC2P26717 231 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 ANTXR2P58335 489 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 CCDC85BQ15834 202 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 VMP1Q96GC9 406 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 TMEM161AQ9NX61 479 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 PNMA8BQ9ULN7 279 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 RNASEH1O60930 286 aaKnown RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 HIBCHQ6NVY1 386 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 C7orf25Q9BPX7 421 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 TRIM4Q9C037 500 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 SCUBE2Q9NQ36 999 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 CACNA2D2Q9NY47 1150 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 WDR35Q9P2L0 1181 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 THEGQ9P2T0 379 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 CEP170BQ9Y4F5 1589 aaPredicted RBP11.87□□□□□ -0.51
TTC28-201ENST00000397906 CPS1P31327 1500 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 RNF103-CHMP3A0A140T963 221 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 ANGPT2O15123 496 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 DNAJC8O75937 253 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms