RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TTC25Q96NG3 672 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 SMC6Q96SB8 1091 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 KIAA1683Q9H0B3 1180 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 POLR3FQ9H1D9 316 aaPredicted RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 VPS37BQ9H9H4 285 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 PARVAQ9NVD7 372 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 NUB1Q9Y5A7 615 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 TMEM191CA6NGB0 347 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 ALOX15BO15296 676 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 TYROBPO43914 113 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 BANF1O75531 89 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 TJP3O95049 919 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 TMEM191BP0C7N4 346 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 CA4P22748 312 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 SP4Q02446 784 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 PARP6Q2NL67 630 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 RNASEH2BQ5TBB1 312 aaKnown RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 CEP128Q6ZU80 1094 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 SLC7A6OSQ96CW6 309 aaPredicted RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 RAB3IPQ96QF0 476 aaPredicted RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 MAK16Q9BXY0 300 aaKnown RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 IP6K2Q9UHH9 426 aa13.42□□□□□ -0.26
SHMT1-205ENST00000395684 AGO2Q9UKV8 859 aaKnown RBP13.42□□□□□ -0.26
SHMT1-205ENST00000395684 KRT1P04264 644 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 MMP8P22894 467 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 CCNG1P51959 295 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 RTP1P59025 263 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 NOP14P78316 857 aaKnown RBP13.41□□□□□ -0.26
SHMT1-205ENST00000395684 OASLQ15646 514 aaKnown RBP13.41□□□□□ -0.26
SHMT1-205ENST00000395684 VSIG10LQ86VR7 867 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 CCDC60Q8IWA6 550 aaPredicted RBP13.41□□□□□ -0.26
SHMT1-205ENST00000395684 MCPH1Q8NEM0 835 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 RDM1Q8NG50 284 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 KCNV2Q8TDN2 545 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 ZNF606Q8WXB4 792 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 FAXDC2Q96IV6 333 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 RBM41Q96IZ5 413 aaKnown RBP13.41□□□□□ -0.26
SHMT1-205ENST00000395684 WNK4Q96J92 1243 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 TMEM121Q9BTD3 319 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 CYP26B1Q9NR63 512 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 SEPT9Q9UHD8 586 aaPredicted RBP13.41□□□□□ -0.26
SHMT1-205ENST00000395684 SMG5Q9UPR3 1016 aaKnown RBP13.41□□□□□ -0.26
SHMT1-205ENST00000395684 CNTN6Q9UQ52 1028 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 RIPK3Q9Y572 518 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 PIAS1O75925 651 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 WFS1O76024 890 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 RGS20O76081 388 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 GM2AP17900 193 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 CETN2P41208 172 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 OGDHQ02218 1023 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 MAP3K10Q02779 954 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 GAD2Q05329 585 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 BAATQ14032 418 aaPredicted RBP13.41□□□□□ -0.26
SHMT1-205ENST00000395684 MORF4L2Q15014 288 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 SPOCD1Q6ZMY3 1216 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 OR5B17Q8NGF7 314 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 LRRC8CQ8TDW0 803 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 C10orf82Q8WW14 230 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 ATP6V0A1Q93050 837 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 BATF3Q9NR55 127 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 DRG1Q9Y295 367 aaKnown RBP13.41□□□□□ -0.26
SHMT1-205ENST00000395684 STYXL1Q9Y6J8 313 aa13.41□□□□□ -0.26
SHMT1-205ENST00000395684 GOLGA8SH3BPF8 625 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 GOLGA8MH3BSY2 632 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 SKAP2O75563 359 aaPredicted RBP13.4□□□□□ -0.26
SHMT1-205ENST00000395684 ATP5HO75947 161 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 NR3C2P08235 984 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 KCNA2P16389 499 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 PSMC4P43686 418 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 GPX6P59796 221 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 PDIA2Q13087 525 aaKnown RBP13.4□□□□□ -0.26
SHMT1-205ENST00000395684 FKBP1CQ5VVH2 108 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 OTOAQ7RTW8 1153 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 FAM83AQ86UY5 434 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 ANKMY2Q8IV38 441 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 LPAR1Q92633 364 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 CYLDQ9NQC7 956 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 RBAKQ9NYW8 714 aaPredicted RBP13.4□□□□□ -0.26
SHMT1-205ENST00000395684 CBX6O95503 412 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 IFNB1P01574 187 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 VCPP55072 806 aaKnown RBP13.4□□□□□ -0.26
SHMT1-205ENST00000395684 PRKCEQ02156 737 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 ZNF449Q6P9G9 518 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 FAM13CQ8NE31 585 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 SUPT20HQ8NEM7 779 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 MCEEQ96PE7 176 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 TBC1D10AQ9BXI6 508 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 SENP1Q9P0U3 644 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 NUMBLQ9Y6R0 609 aa13.4□□□□□ -0.26
SHMT1-205ENST00000395684 hCG_1818297A0A087WSY0 165 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 TCRBV5S1A1TA0A578 114 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 DCTN3O75935 186 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 KRT4P19013 534 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 GNAZP19086 355 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 EFTUD2Q15029 972 aaKnown RBP eCLIP13.39□□□□□ -0.27
SHMT1-205ENST00000395684 SEZ6Q53EL9 994 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 PLEKHG4Q58EX7 1191 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 LVRNQ6Q4G3 990 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 AGGF1Q8N302 714 aaeCLIP13.39□□□□□ -0.27
SHMT1-205ENST00000395684 ZNF75CPQ92670 426 aaPredicted RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms