RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SV2AQ7L0J3 742 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 LIMS2Q7Z4I7 341 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 ADHFE1Q8IWW8 467 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 OR10T2Q8NGX3 314 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 SLC7A14Q8TBB6 771 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 SYAP1Q96A49 352 aaPredicted RBP23.33■■□□□ 1.32
CLN3-207ENST00000395653 ZNF707Q96C28 371 aaPredicted RBP23.33■■□□□ 1.32
CLN3-207ENST00000395653 RTP3Q9BQQ7 232 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 PHF7Q9BWX1 381 aaPredicted RBP23.33■■□□□ 1.32
CLN3-207ENST00000395653 COL25A1Q9BXS0 654 aaPredicted RBP23.33■■□□□ 1.32
CLN3-207ENST00000395653 PRKD2Q9BZL6 878 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 VRTNQ9H8Y1 702 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 CTNND2Q9UQB3 1225 aa23.33■■□□□ 1.32
CLN3-207ENST00000395653 MBD3O95983 291 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 POU2F2P09086 479 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 WEE2P0C1S8 567 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 ELF1P32519 619 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 ZP2Q05996 745 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 SOWAHAQ2M3V2 549 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 PPM1LQ5SGD2 360 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 TCEAL8Q8IYN2 117 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 CEP63Q96MT8 703 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 NECAB3Q96P71 396 aaPredicted RBP23.32■■□□□ 1.32
CLN3-207ENST00000395653 XYLT2Q9H1B5 865 aa23.32■■□□□ 1.32
CLN3-207ENST00000395653 OR4Q2P0C623 313 aa23.31■■□□□ 1.32
CLN3-207ENST00000395653 TRIM49P0CI25 452 aa23.31■■□□□ 1.32
CLN3-207ENST00000395653 TRIM49CP0CI26 452 aa23.31■■□□□ 1.32
CLN3-207ENST00000395653 MYL6P60660 151 aa23.31■■□□□ 1.32
CLN3-207ENST00000395653 NCOA4Q13772 614 aa23.31■■□□□ 1.32
CLN3-207ENST00000395653 ADGRF2Q8IZF7 708 aa23.31■■□□□ 1.32
CLN3-207ENST00000395653 FEZF2Q8TBJ5 459 aa23.31■■□□□ 1.32
CLN3-207ENST00000395653 SMG7Q92540 1137 aaKnown RBP23.31■■□□□ 1.32
CLN3-207ENST00000395653 DUSP9Q99956 384 aaKnown RBP23.31■■□□□ 1.32
CLN3-207ENST00000395653 ZCWPW1Q9H0M4 648 aa23.31■■□□□ 1.32
CLN3-207ENST00000395653 POMKQ9H5K3 350 aa23.31■■□□□ 1.32
CLN3-207ENST00000395653 C5orf42Q9H799 3197 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 VNN1O95497 513 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 GTF2H1P32780 548 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 LHX1P48742 406 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 MYL7Q01449 175 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 PPP3CAQ08209 521 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 ADCY1Q08828 1119 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 WDR72Q3MJ13 1102 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 RNF19BQ6ZMZ0 732 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 FILIP1Q7Z7B0 1213 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 MLKLQ8NB16 471 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 TMEM209Q96SK2 561 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 CYP4F11Q9HBI6 524 aa23.3■■□□□ 1.32
CLN3-207ENST00000395653 C19orf67A6NJJ6 358 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 PRRG1O14668 218 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 GABRDO14764 452 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 STX10O60499 249 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 SEC24AO95486 1093 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 FAM163BP0C2L3 166 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 GCLMP48507 274 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 TNNC1P63316 161 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 ZNF699Q32M78 642 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 TAF4BQ92750 862 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 ACBD6Q9BR61 282 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 PIDD1Q9HB75 910 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 METTL14Q9HCE5 456 aaKnown RBP23.29■■□□□ 1.32
CLN3-207ENST00000395653 TMEM8AQ9HCN3 771 aa23.29■■□□□ 1.32
CLN3-207ENST00000395653 DDX43Q9NXZ2 648 aaKnown RBP23.29■■□□□ 1.32
CLN3-207ENST00000395653 ARMCX3Q9UH62 379 aaPredicted RBP23.29■■□□□ 1.32
CLN3-207ENST00000395653 MTMR11A4FU01 709 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 XYLBO75191 536 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 TACC1O75410 805 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 STX17P56962 302 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 SMARCB1Q12824 385 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 SGSM1Q2NKQ1 1148 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 OSTM1Q86WC4 334 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 KBTBD7Q8WVZ9 684 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 MMS19Q96T76 1030 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 WDR6Q9NNW5 1121 aaKnown RBP23.28■■□□□ 1.32
CLN3-207ENST00000395653 HSFX1Q9UBD0 423 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 RWDD2AQ9UIY3 292 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 INSL5Q9Y5Q6 135 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 C2orf16Q68DN1 1984 aa23.28■■□□□ 1.32
CLN3-207ENST00000395653 VNN2O95498 520 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 LRG1P02750 347 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 WARSP23381 471 aaKnown RBP23.27■■□□□ 1.32
CLN3-207ENST00000395653 PCSK1P29120 753 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 TSPY1Q01534 308 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 ZNF667Q5HYK9 610 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 KRT39Q6A163 491 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 RBM43Q6ZSC3 357 aaKnown RBP23.27■■□□□ 1.32
CLN3-207ENST00000395653 DENND4AQ7Z401 1863 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 FRMD5Q7Z6J6 570 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 DCP1BQ8IZD4 617 aaKnown RBP23.27■■□□□ 1.32
CLN3-207ENST00000395653 C2orf15Q8WU43 125 aaKnown RBP23.27■■□□□ 1.32
CLN3-207ENST00000395653 PGLYRP2Q96PD5 576 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 BDP1A6H8Y1 2624 aa23.27■■□□□ 1.32
CLN3-207ENST00000395653 CLUHO75153 1309 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 LOC730098B7Z3J9 87 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 CCL16O15467 120 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 ASS1P00966 412 aaKnown RBP23.26■■□□□ 1.31
CLN3-207ENST00000395653 HLA-DRAP01903 254 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 PIK3CAP42336 1068 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 SLC39A12Q504Y0 691 aa23.26■■□□□ 1.31
CLN3-207ENST00000395653 GJD3Q8N144 294 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms