RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 H2AFY2Q9P0M6 372 aaPredicted RBP5.5□□□□□ -1.53
USP48-202ENST00000374730 DNAI1Q9UI46 699 aa5.5□□□□□ -1.53
USP48-202ENST00000374730 CFAP45Q9UL16 551 aa5.5□□□□□ -1.53
USP48-202ENST00000374730 HS3ST3A1Q9Y663 406 aa5.5□□□□□ -1.53
USP48-202ENST00000374730 CARMIL3Q8ND23 1372 aa5.5□□□□□ -1.53
USP48-202ENST00000374730 BCL9LQ86UU0 1499 aa5.5□□□□□ -1.53
USP48-202ENST00000374730 ZNF891A8MT65 544 aaPredicted RBP5.49□□□□□ -1.53
USP48-202ENST00000374730 GPAA1O43292 621 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 DAPK3O43293 454 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 OPHN1O60890 802 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 TOX4O94842 621 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 CAVIN2O95810 425 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 FGAP02671 866 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 C1SP09871 688 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 FGFR2P21802 821 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 GPTP24298 496 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 PDIA3P30101 505 aaKnown RBP5.49□□□□□ -1.53
USP48-202ENST00000374730 MCAMP43121 646 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 TERF1P54274 439 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 SMAD3P84022 425 aaKnown RBP5.49□□□□□ -1.53
USP48-202ENST00000374730 OCRLQ01968 901 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 PUM3Q15397 648 aaKnown RBP5.49□□□□□ -1.53
USP48-202ENST00000374730 ALX1Q15699 326 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 LSM12Q3MHD2 195 aaKnown RBP5.49□□□□□ -1.53
USP48-202ENST00000374730 PARP10Q53GL7 1025 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 FAM173BQ6P4H8 233 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 GAREM2Q75VX8 874 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 TMPRSS6Q8IU80 811 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 AHI1Q8N157 1196 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 NXPE1Q8N323 547 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 NCOA7Q8NI08 942 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 CHTF18Q8WVB6 975 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 LPIN2Q92539 896 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 MIEF2Q96C03 454 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 PGBD1Q96JS3 809 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 HIST1H2AHQ96KK5 128 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 ZNF396Q96N95 335 aaPredicted RBP5.49□□□□□ -1.53
USP48-202ENST00000374730 HIST1H2AJQ99878 128 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 TCF25Q9BQ70 676 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 MRIQ9BWK5 157 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 LRRC2Q9BYS8 371 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 CSRNP2Q9H175 543 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 POFUT1Q9H488 388 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 CLSTN2Q9H4D0 955 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 CNNM1Q9NRU3 951 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 TRMT112Q9UI30 125 aaKnown RBP5.49□□□□□ -1.53
USP48-202ENST00000374730 RCOR1Q9UKL0 485 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 NID2Q14112 1375 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 NHSQ6T4R5 1651 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 LAMB1P07942 1786 aa5.49□□□□□ -1.53
USP48-202ENST00000374730 TAF1LQ8IZX4 1826 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 CACNA1SQ13698 1873 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 CCDC88AQ3V6T2 1871 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 A0A0G2JLW4 131 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 GOLGA6L4A6NEF3 574 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 GOLGA8BA8MQT2 603 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 ZNF213O14771 459 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 CTAGE5O15320 804 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 PRC1O43663 620 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 NARSO43776 548 aaKnown RBP5.48□□□□□ -1.53
USP48-202ENST00000374730 DHX16O60231 1041 aaKnown RBP5.48□□□□□ -1.53
USP48-202ENST00000374730 DTNBO60941 627 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 CAMTA2O94983 1202 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 FSBPO95073 299 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 ADCY5O95622 1261 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 TPM3P06753 285 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 TPM2P07951 284 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 SLC5A1P13866 664 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 KPNA1P52294 538 aaPredicted RBP5.48□□□□□ -1.53
USP48-202ENST00000374730 PHC1P78364 1004 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 ACAP1Q15027 740 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 DDB1Q16531 1140 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 KRT40Q6A162 431 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 TTLL5Q6EMB2 1281 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 MFSD5Q6N075 450 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 FAM111BQ6SJ93 734 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 SYNE4Q8N205 404 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 AMER2Q8N7J2 671 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 SMC1BQ8NDV3 1235 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 PPP1R14CQ8TAE6 165 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 MFSD3Q96ES6 412 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 NAP1L5Q96NT1 182 aaPredicted RBP5.48□□□□□ -1.53
USP48-202ENST00000374730 PLEKHG4BQ96PX9 1271 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 NOL10Q9BSC4 688 aaKnown RBP5.48□□□□□ -1.53
USP48-202ENST00000374730 PUS7LQ9H0K6 701 aaKnown RBP5.48□□□□□ -1.53
USP48-202ENST00000374730 TNMDQ9H2S6 317 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 THG1LQ9NWX6 298 aaKnown RBP5.48□□□□□ -1.53
USP48-202ENST00000374730 RGS17Q9UGC6 210 aaPredicted RBP5.48□□□□□ -1.53
USP48-202ENST00000374730 USP25Q9UHP3 1055 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 MYH2Q9UKX2 1941 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 BTAF1O14981 1849 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 LY75O60449 1722 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 SPATA31A5Q5VU36 1347 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 SPATA31A7Q8IWB4 1347 aa5.48□□□□□ -1.53
USP48-202ENST00000374730 THSD7AQ9UPZ6 1657 aa5.47□□□□□ -1.53
USP48-202ENST00000374730 KLF18A0A0U1RQI7 1052 aa5.47□□□□□ -1.53
USP48-202ENST00000374730 UBE2QL1A1L167 161 aa5.47□□□□□ -1.53
USP48-202ENST00000374730 SH2B2O14492 632 aaPredicted RBP5.47□□□□□ -1.53
USP48-202ENST00000374730 TGM5O43548 720 aa5.47□□□□□ -1.53
USP48-202ENST00000374730 APOL3O95236 402 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms