RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SURF1Q15526 300 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 ZNF699Q32M78 642 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 CELF3Q5SZQ8 465 aaKnown RBP23.06■■□□□ 1.28
SHMT1-202ENST00000352886 BBOF1Q8ND07 529 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 TRAPPC12Q8WVT3 735 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 TFAP2BQ92481 460 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 ELP3Q9H9T3 547 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 NINJ2Q9NZG7 142 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 CTNNAL1Q9UBT7 734 aa23.06■■□□□ 1.28
SHMT1-202ENST00000352886 DICER1Q9UPY3 1922 aaKnown RBP23.05■■□□□ 1.28
SHMT1-202ENST00000352886 IGKV6-21A0A0C4DH24 114 aa23.05■■□□□ 1.28
SHMT1-202ENST00000352886 SOCS7O14512 581 aa23.05■■□□□ 1.28
SHMT1-202ENST00000352886 CNMDO75829 334 aa23.05■■□□□ 1.28
SHMT1-202ENST00000352886 KLRC2P26717 231 aa23.05■■□□□ 1.28
SHMT1-202ENST00000352886 MFSD7Q6UXD7 560 aa23.05■■□□□ 1.28
SHMT1-202ENST00000352886 ARHGEF2Q92974 986 aaKnown RBP23.05■■□□□ 1.28
SHMT1-202ENST00000352886 FGD4Q96M96 766 aa23.05■■□□□ 1.28
SHMT1-202ENST00000352886 NLRP4Q96MN2 994 aa23.05■■□□□ 1.28
SHMT1-202ENST00000352886 JPH2Q9BR39 696 aaPredicted RBP23.05■■□□□ 1.28
SHMT1-202ENST00000352886 C2orf40Q9H1Z8 148 aa23.05■■□□□ 1.28
SHMT1-202ENST00000352886 A0A0G2JLL6 359 aaPredicted RBP23.04■■□□□ 1.28
SHMT1-202ENST00000352886 H0YHG0 523 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 LGR5O75473 907 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 PLCB4Q15147 1175 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 FBXW10Q5XX13 1052 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 MPZL3Q6UWV2 235 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 PRRT2Q7Z6L0 340 aaPredicted RBP23.04■■□□□ 1.28
SHMT1-202ENST00000352886 CDR2LQ86X02 465 aaPredicted RBP23.04■■□□□ 1.28
SHMT1-202ENST00000352886 WDTC1Q8N5D0 677 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 CEP120Q8N960 986 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 EVPLQ92817 2033 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 LIASO43766 372 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 ASPAP45381 313 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 IFNAR2P48551 515 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 CNGA2Q16280 664 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 CYP4A22Q5TCH4 519 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 MPHOSPH6Q99547 160 aaKnown RBP23.04■■□□□ 1.28
SHMT1-202ENST00000352886 OSBPL7Q9BZF2 842 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 ZNF518BQ9C0D4 1074 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 DNPEPQ9ULA0 475 aa23.04■■□□□ 1.28
SHMT1-202ENST00000352886 INO80B-WBP1J3KQ70 363 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 B4GALT5O43286 388 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 TJP3O95049 919 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 PROZP22891 400 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 R3HDM1Q15032 1099 aaKnown RBP23.03■■□□□ 1.28
SHMT1-202ENST00000352886 TMEM132AQ24JP5 1023 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 P3H1Q32P28 736 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 ATF7IP2Q5U623 682 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 TXNRD3NBQ6F5E7 133 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 TSHZ1Q6ZSZ6 1077 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 PLPPR4Q7Z2D5 763 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 ERICH1Q86X53 443 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 ACSF2Q96CM8 615 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-202ENST00000352886 SPATA33Q96N06 139 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 INO80BQ9C086 356 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-202ENST00000352886 XYLT2Q9H1B5 865 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 CCDC134Q9H6E4 229 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 GOLGA6L7A0A1B0GV03 622 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 EIF4BP23588 611 aaKnown RBP23.03■■□□□ 1.28
SHMT1-202ENST00000352886 KCNV1Q6PIU1 500 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 FBXO16Q8IX29 292 aaPredicted RBP23.03■■□□□ 1.28
SHMT1-202ENST00000352886 EXOC8Q8IYI6 725 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 LRRC34Q8IZ02 419 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 ZBTB10Q96DT7 871 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 PTPRHQ9HD43 1115 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 TXNRD2Q9NNW7 524 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 PCDHGC3Q9UN70 934 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 CEP83Q9Y592 693 aa23.03■■□□□ 1.28
SHMT1-202ENST00000352886 ACKR2O00590 384 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 TNNC2P02585 160 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 CREB1P16220 341 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 ATP5DP30049 168 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 LMNB2Q03252 620 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 ACTN3Q08043 901 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-202ENST00000352886 PPP1R15BQ5SWA1 713 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 LRRC38Q5VT99 294 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 HIBCHQ6NVY1 386 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-202ENST00000352886 DHX37Q8IY37 1157 aaKnown RBP23.02■■□□□ 1.28
SHMT1-202ENST00000352886 GLIS1Q8NBF1 620 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 C9orf72Q96LT7 481 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 NXF1Q9UBU9 619 aaKnown RBP23.02■■□□□ 1.28
SHMT1-202ENST00000352886 ZNF148Q9UQR1 794 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 CDH5P33151 784 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-202ENST00000352886 SPOCD1Q6ZMY3 1216 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 SULF1Q8IWU6 871 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 COPS5Q92905 334 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 ANKRD36BP1Q96IX9 119 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 CLMNQ96JQ2 1002 aa23.02■■□□□ 1.28
SHMT1-202ENST00000352886 FHDC1Q9C0D6 1143 aaPredicted RBP23.02■■□□□ 1.28
SHMT1-202ENST00000352886 DDNO94850 711 aaPredicted RBP23.01■■□□□ 1.27
SHMT1-202ENST00000352886 SLC25A27O95847 323 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 LACTBP83111 547 aaPredicted RBP23.01■■□□□ 1.27
SHMT1-202ENST00000352886 PIGHQ14442 188 aaPredicted RBP23.01■■□□□ 1.27
SHMT1-202ENST00000352886 EEF1DP3Q658K8 133 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 CCDC13Q8IYE1 715 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 DCPSQ96C86 337 aaKnown RBP23.01■■□□□ 1.27
SHMT1-202ENST00000352886 FZD8Q9H461 694 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 POLIQ9UNA4 740 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 TMEM120BA0PK00 339 aa23.01■■□□□ 1.27
SHMT1-202ENST00000352886 FOXO6A8MYZ6 492 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms