RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TAS2R40P59535 323 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 NOP14P78316 857 aaKnown RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 MAP3K10Q02779 954 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 ZBTB16Q05516 673 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 PDIA2Q13087 525 aaKnown RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 HNRNPDQ14103 355 aaKnown RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 DLGAP5Q15398 846 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 HSF5Q4G112 596 aaPredicted RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 EFHC2Q5JST6 749 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 RNF111Q6ZNA4 994 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 ACAD11Q709F0 780 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 SPATA24Q86W54 205 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 REM2Q8IYK8 340 aaPredicted RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 ZBED8Q8IZ13 594 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 PPM1KQ8N3J5 372 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 SLC25A41Q8N5S1 370 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 RBM15BQ8NDT2 890 aaKnown RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 DHX38Q92620 1227 aaKnown RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 SEMA4DQ92854 862 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 PPP2R3CQ969Q6 453 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 TTC1Q99614 292 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 STRA6Q9BX79 667 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 FOXP3Q9BZS1 431 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 TMEM117Q9H0C3 514 aa7.16□□□□□ -1.26
VPS39-202ENST00000348544 SSU72Q9NP77 194 aaKnown RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 WRAP73Q9P2S5 460 aaPredicted RBP7.16□□□□□ -1.26
VPS39-202ENST00000348544 TTC36A6NLP5 189 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 CAPN14A8MX76 684 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 H3BRJ5 948 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ZNF862O60290 1169 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ITGA2BP08514 1039 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 MYL2P10916 166 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 PIM1P11309 404 aaPredicted RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 SLC1A1P43005 524 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 MAGEA8P43361 318 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 SNAP25P60880 206 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ACTR3P61158 418 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 GAD2Q05329 585 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 MSLNQ13421 630 aaPredicted RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 PRKD1Q15139 912 aaPredicted RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 RASA2Q15283 850 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 MDH1BQ5I0G3 518 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ODR4Q5SWX8 454 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 FAM91A1Q658Y4 838 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ACAD10Q6JQN1 1059 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 CCDC62Q6P9F0 684 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 GSTA5Q7RTV2 222 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 NET1Q7Z628 596 aaPredicted RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 SATL1Q86VE3 508 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ANKMY2Q8IV38 441 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 TPH2Q8IWU9 490 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 DAW1Q8N136 415 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 BANPQ8N9N5 519 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 HIC2Q96JB3 615 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 DNAJC1Q96KC8 554 aaKnown RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 FAM20AQ96MK3 541 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 OLFM3Q96PB7 478 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 CBWD1Q9BRT8 395 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 WDR83Q9BRX9 315 aaKnown RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 NDE1Q9NXR1 346 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 IL1RAPL1Q9NZN1 696 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 SLC7A8Q9UHI5 535 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 SLC24A2Q9UI40 661 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 RABGEF1Q9UJ41 708 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ZNF510Q9Y2H8 683 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 MTO1Q9Y2Z2 717 aaKnown RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 hCG_2014768A0A024R1R8 64 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 FAM237BA0A1B0GVD1 139 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ALOX15BO15296 676 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 BAG2O95816 211 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ENO1P06733 434 aaKnown RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 CD58P19256 250 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 TM4SF1P30408 202 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 DEUP1Q05D60 604 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 TFDP1Q14186 410 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 CLEC16AQ2KHT3 1053 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 SFT2D3Q587I9 215 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 CFAP157Q5JU67 520 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 GPATCH4Q5T3I0 446 aaKnown RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 CLEC4GQ6UXB4 293 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 PDSS2Q86YH6 399 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 SCUBE1Q8IWY4 988 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ULK2Q8IYT8 1036 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 ST13P4Q8IZP2 240 aaPredicted RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 ZNF526Q8TF50 670 aaPredicted RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 NMD3Q96D46 503 aaKnown RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 RBM17Q96I25 401 aaKnown RBP7.15□□□□□ -1.26
VPS39-202ENST00000348544 VPS11Q9H270 941 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 RHBDL2Q9NX52 303 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 BTG4Q9NY30 223 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 CLIC5Q9NZA1 410 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 DNPEPQ9ULA0 475 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 PCDHGA4Q9Y5G9 962 aa7.15□□□□□ -1.26
VPS39-202ENST00000348544 RBBP6Q7Z6E9 1792 aaKnown RBP7.15□□□□□ -1.27
VPS39-202ENST00000348544 DENND3A2RUS2 1198 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 P4HA2O15460 535 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 CHMP2AO43633 222 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 LIASO43766 372 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 TM7SF2O76062 418 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 TGDSO95455 350 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms