RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 KANSL3Q9P2N6 904 aa23.62■■□□□ 1.37
TRIM28-202ENST00000341753 DNALI1O14645 258 aaPredicted RBP23.61■■□□□ 1.37
TRIM28-202ENST00000341753 KRT36O76013 467 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 IFNB1P01574 187 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 P4HBP07237 508 aaKnown RBP23.61■■□□□ 1.37
TRIM28-202ENST00000341753 ERFP50548 548 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 PDIA2Q13087 525 aaKnown RBP23.61■■□□□ 1.37
TRIM28-202ENST00000341753 RCN1Q15293 331 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 DTX3LQ8TDB6 740 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 ANKRD27Q96NW4 1050 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 MXRA8Q9BRK3 442 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 C10orf88Q9H8K7 445 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 ARL8BQ9NVJ2 186 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 SMG5Q9UPR3 1016 aaKnown RBP23.61■■□□□ 1.37
TRIM28-202ENST00000341753 E7ENQ6 273 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 TYROBPO43914 113 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 KLC1Q07866 573 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 NR1H3Q13133 447 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 RNF220Q5VTB9 566 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 C2orf71A6NGG8 1288 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 NVLO15381 856 aaKnown RBP23.61■■□□□ 1.37
TRIM28-202ENST00000341753 YWHABP31946 246 aaKnown RBP23.61■■□□□ 1.37
TRIM28-202ENST00000341753 MRPS35P82673 323 aaKnown RBP23.61■■□□□ 1.37
TRIM28-202ENST00000341753 ALCAMQ13740 583 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 C4orf50Q6ZRC1 276 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 RFX8Q6ZV50 586 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 TEKT4Q8WW24 435 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 AVENQ9NQS1 362 aaPredicted RBP23.61■■□□□ 1.37
TRIM28-202ENST00000341753 COQ4Q9Y3A0 265 aa23.61■■□□□ 1.37
TRIM28-202ENST00000341753 LIASO43766 372 aa23.6■■□□□ 1.37
TRIM28-202ENST00000341753 CTC1Q2NKJ3 1217 aa23.6■■□□□ 1.37
TRIM28-202ENST00000341753 RGS9BPQ6ZS82 235 aa23.6■■□□□ 1.37
TRIM28-202ENST00000341753 NRG4Q8WWG1 115 aa23.6■■□□□ 1.37
TRIM28-202ENST00000341753 CYLDQ9NQC7 956 aa23.6■■□□□ 1.37
TRIM28-202ENST00000341753 TBX20Q9UMR3 447 aa23.6■■□□□ 1.37
TRIM28-202ENST00000341753 WNT10BO00744 389 aa23.6■■□□□ 1.37
TRIM28-202ENST00000341753 KCNA3P22001 575 aa23.6■■□□□ 1.37
TRIM28-202ENST00000341753 KPNB1Q14974 876 aaKnown RBP23.6■■□□□ 1.37
TRIM28-202ENST00000341753 FBXO6Q9NRD1 293 aaPredicted RBP23.6■■□□□ 1.37
TRIM28-202ENST00000341753 ZNF536O15090 1300 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 DENND3A2RUS2 1198 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 NEFHP12036 1026 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 ACADSP16219 412 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 SSTR1P30872 391 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 NFX1Q12986 1120 aaKnown RBP23.59■■□□□ 1.37
TRIM28-202ENST00000341753 FYB2Q5VWT5 728 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 AP1ARQ63HQ0 302 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 SLC30A9Q6PML9 568 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 MON1BQ7L1V2 547 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 RBBP8NLQ8NC74 664 aaPredicted RBP23.59■■□□□ 1.37
TRIM28-202ENST00000341753 ZNF333Q96JL9 665 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 DCLRE1BQ9H816 532 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 RAVER2Q9HCJ3 691 aaKnown RBP23.59■■□□□ 1.37
TRIM28-202ENST00000341753 SLC17A7Q9P2U7 560 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 SP100P23497 879 aaPredicted RBP23.59■■□□□ 1.37
TRIM28-202ENST00000341753 SEPT7Q16181 437 aaKnown RBP23.59■■□□□ 1.37
TRIM28-202ENST00000341753 SLC45A4Q5BKX6 768 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 SLC39A4Q6P5W5 647 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 MFSD7Q6UXD7 560 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 PHC3Q8NDX5 983 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.59■■□□□ 1.37
TRIM28-202ENST00000341753 HEY2Q9UBP5 337 aa23.59■■□□□ 1.37
TRIM28-202ENST00000341753 C2CD2LO14523 706 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 PMM2O15305 246 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 TLR3O15455 904 aaKnown RBP23.58■■□□□ 1.37
TRIM28-202ENST00000341753 MAPTP10636 758 aaKnown RBP23.58■■□□□ 1.37
TRIM28-202ENST00000341753 QARSP47897 775 aaKnown RBP23.58■■□□□ 1.37
TRIM28-202ENST00000341753 PLCB3Q01970 1234 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 CXCL9Q07325 125 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 MAMLD1Q13495 774 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 RCN2Q14257 317 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 XKR9Q5GH70 373 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 SNX30Q5VWJ9 437 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.58■■□□□ 1.372e-8■■□□□ 12.1
TRIM28-202ENST00000341753 KATNAL2Q8IYT4 538 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 PTPRN2Q92932 1015 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 RIT2Q99578 217 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 FAM213AQ9BRX8 229 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 TMEM121Q9BTD3 319 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 PPP1R12CQ9BZL4 782 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 EHMT1Q9H9B1 1298 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 PAPOLBQ9NRJ5 636 aaKnown RBP23.58■■□□□ 1.37
TRIM28-202ENST00000341753 C1orf112Q9NSG2 853 aa23.58■■□□□ 1.37
TRIM28-202ENST00000341753 ASTN2O75129 1339 aaPredicted RBP23.58■■□□□ 1.37
TRIM28-202ENST00000341753 PSTPIP1O43586 416 aa23.58■■□□□ 1.36
TRIM28-202ENST00000341753 TFDP1Q14186 410 aa23.58■■□□□ 1.36
TRIM28-202ENST00000341753 ACSBG2Q5FVE4 666 aa23.58■■□□□ 1.36
TRIM28-202ENST00000341753 FAM182AQ5T1J6 154 aa23.58■■□□□ 1.36
TRIM28-202ENST00000341753 LRRC6Q86X45 466 aa23.58■■□□□ 1.36
TRIM28-202ENST00000341753 TDRPQ86YL5 185 aa23.58■■□□□ 1.36
TRIM28-202ENST00000341753 FBXO41Q8TF61 875 aa23.58■■□□□ 1.36
TRIM28-202ENST00000341753 PSMC3IPQ9P2W1 217 aaPredicted RBP23.58■■□□□ 1.36
TRIM28-202ENST00000341753 TRAFD1O14545 582 aaPredicted RBP23.57■■□□□ 1.36
TRIM28-202ENST00000341753 DHX15O43143 795 aaKnown RBP23.57■■□□□ 1.36
TRIM28-202ENST00000341753 ZBED4O75132 1171 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 FESP07332 822 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 GPX6P59796 221 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 RPL7AP62424 266 aaKnown RBP23.57■■□□□ 1.36
TRIM28-202ENST00000341753 CYP24A1Q07973 514 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 NLRX1Q86UT6 975 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms