RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 TMC2Q8TDI7 906 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 CNKSR1Q969H4 720 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 TTC17Q96AE7 1141 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 TRIM6Q9C030 488 aaPredicted RBP15.19■□□□□ 0.02
CPSF7-201ENST00000340437 YIPF3Q9GZM5 350 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 PXMP2Q9NR77 195 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 TJP3O95049 919 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 HIRAP54198 1017 aaPredicted RBP15.19■□□□□ 0.02
CPSF7-201ENST00000340437 NOMO3P69849 1222 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 TFAMQ00059 246 aaKnown RBP15.19■□□□□ 0.02
CPSF7-201ENST00000340437 GCNT1Q02742 428 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 MDH1BQ5I0G3 518 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 BZW1Q7L1Q6 419 aaKnown RBP15.19■□□□□ 0.02
CPSF7-201ENST00000340437 ANKLE1Q8NAG6 615 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 ATP6V0A1Q93050 837 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 L3MBTL3Q96JM7 780 aaPredicted RBP15.19■□□□□ 0.02
CPSF7-201ENST00000340437 ARHGEF3Q9NR81 526 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 ZFP69BQ9UJL9 534 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 COQ4Q9Y3A0 265 aa15.19■□□□□ 0.02
CPSF7-201ENST00000340437 ZNF541Q9H0D2 1346 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 ENO4A6NNW6 628 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 LIASO43766 372 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 CPA2P48052 419 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 TLDC1Q6P9B6 456 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 SYDE1Q6ZW31 735 aaPredicted RBP15.18■□□□□ 0.02
CPSF7-201ENST00000340437 ZNF606Q8WXB4 792 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 RSAD2Q8WXG1 361 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 HSPH1Q92598 858 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 TRIM11Q96F44 468 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 FAM81BQ96LP2 452 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 RAB3IPQ96QF0 476 aaPredicted RBP15.18■□□□□ 0.02
CPSF7-201ENST00000340437 XPNPEP1Q9NQW7 623 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 CST3P01034 146 aaPredicted RBP15.18■□□□□ 0.02
CPSF7-201ENST00000340437 SRGAP2CP0DJJ0 459 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 SNRNP48Q6IEG0 339 aaKnown RBP15.18■□□□□ 0.02
CPSF7-201ENST00000340437 CENPUQ71F23 418 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 DEFB132Q7Z7B7 95 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 CTAGE3PQ8IX95 158 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 MAGEC3Q8TD91 643 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 DTX3LQ8TDB6 740 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 PPP1R16BQ96T49 567 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 CALN1Q9BXU9 219 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 METTL5Q9NRN9 209 aaKnown RBP15.18■□□□□ 0.02
CPSF7-201ENST00000340437 PARVAQ9NVD7 372 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 USH1CQ9Y6N9 552 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 DNALI1O14645 258 aaPredicted RBP15.18■□□□□ 0.02
CPSF7-201ENST00000340437 VNN1O95497 513 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 MARK3P27448 753 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 GCLCP48506 637 aaPredicted RBP15.18■□□□□ 0.02
CPSF7-201ENST00000340437 NCOA4Q13772 614 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 ANKRD22Q5VYY1 191 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 TAS1R3Q7RTX0 852 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 ZC3H18Q86VM9 953 aaKnown RBP15.18■□□□□ 0.02
CPSF7-201ENST00000340437 MAML1Q92585 1016 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 AKT1S1Q96B36 256 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 CYP26B1Q9NR63 512 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 TJP2Q9UDY2 1190 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 CHMP2BQ9UQN3 213 aa15.18■□□□□ 0.02
CPSF7-201ENST00000340437 SCN9AQ15858 1988 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 TNFSF9P41273 254 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 TTLL12Q14166 644 aaPredicted RBP15.17■□□□□ 0.02
CPSF7-201ENST00000340437 ZCCHC9Q8N567 271 aaKnown RBP15.17■□□□□ 0.02
CPSF7-201ENST00000340437 CCHCR1Q8TD31 782 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 C7orf43Q8WVR3 580 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 UTP4Q969X6 686 aaKnown RBP15.17■□□□□ 0.02
CPSF7-201ENST00000340437 ANKEF1Q9NU02 776 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 IKBKGQ9Y6K9 419 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 EXTL3O43909 919 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 KLF1Q13351 362 aaPredicted RBP15.17■□□□□ 0.02
CPSF7-201ENST00000340437 GPAT2Q6NUI2 795 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 SPOCD1Q6ZMY3 1216 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 APBB1IPQ7Z5R6 666 aaPredicted RBP15.17■□□□□ 0.02
CPSF7-201ENST00000340437 THNSL1Q8IYQ7 743 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 SCYL3Q8IZE3 742 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 CCDC33Q8N5R6 958 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 SLITRK1Q96PX8 696 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 TBC1D10AQ9BXI6 508 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 EBF2Q9HAK2 575 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 PRKAG3Q9UGI9 489 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 GINS2Q9Y248 185 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 ATRNL1Q5VV63 1379 aa15.17■□□□□ 0.02
CPSF7-201ENST00000340437 F5H423 210 aaPredicted RBP15.16■□□□□ 0.02
CPSF7-201ENST00000340437 CST8O60676 142 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 ASMTLO95671 621 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 PSMA2P25787 234 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 CTCFP49711 727 aaPredicted RBP15.16■□□□□ 0.02
CPSF7-201ENST00000340437 GDF10P55107 478 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 YWHAGP61981 247 aaKnown RBP eCLIP15.16■□□□□ 0.02
CPSF7-201ENST00000340437 HIF1AQ16665 826 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 FYB2Q5VWT5 728 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 CRELD2Q6UXH1 353 aaPredicted RBP15.16■□□□□ 0.02
CPSF7-201ENST00000340437 NLRP9Q7RTR0 991 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 OTOAQ7RTW8 1153 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 LRRC6Q86X45 466 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 EXD1Q8NHP7 514 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 AVENQ9NQS1 362 aaPredicted RBP15.16■□□□□ 0.02
CPSF7-201ENST00000340437 SLC17A7Q9P2U7 560 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 PSTPIP1O43586 416 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 PSAPP07602 524 aa15.16■□□□□ 0.02
CPSF7-201ENST00000340437 SFNP31947 248 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms