RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 FBXL5Q9UKA1 691 aa12.76□□□□□ -0.37
SPTLC1-202ENST00000337841 L1RE1Q9UN81 338 aa12.76□□□□□ -0.37
SPTLC1-202ENST00000337841 PCDHGC5Q9Y5F6 944 aa12.76□□□□□ -0.37
SPTLC1-202ENST00000337841 TBC1D4O60343 1298 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 CLASP2O75122 1294 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 SRGAP2BP0DMP2 458 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 RPL17P18621 184 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 TRIM21P19474 475 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 WARSP23381 471 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 COPB1P53618 953 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 ARPP19P56211 112 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 YWHAEP62258 255 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 NOP14P78316 857 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 TSPY1Q01534 308 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 LRMPQ12912 555 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 RAB33AQ14088 237 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 CCDC85BQ15834 202 aaPredicted RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 DUSP6Q16828 381 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 EXOC3L4Q17RC7 722 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 SPOPLQ6IQ16 392 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 LIMS2Q7Z4I7 341 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 ADGRD2Q7Z7M1 963 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 LUZP1Q86V48 1076 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 PALB2Q86YC2 1186 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 DCP1BQ8IZD4 617 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 OR6B3Q8NGW1 331 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 TATDN2Q93075 761 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 FAM81BQ96LP2 452 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 ACBD6Q9BR61 282 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 NIF3L1Q9GZT8 377 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.75□□□□□ -0.379e-15■■■■■ 186.3
SPTLC1-202ENST00000337841 DDX43Q9NXZ2 648 aaKnown RBP12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 POLIQ9UNA4 740 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 CDY1Q9Y6F8 540 aa12.75□□□□□ -0.37
SPTLC1-202ENST00000337841 TDRD15B5MCY1 1934 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 GBF1Q92538 1859 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 GABRDO14764 452 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 SERPINC1P01008 464 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 WEE2P0C1S8 567 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 TBXAS1P24557 533 aaPredicted RBP12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 ELF1P32519 619 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 CDH8P55286 799 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 HYAL1Q12794 435 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 SKIV2LQ15477 1246 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 MIIPQ5JXC2 388 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 TPGS2Q68CL5 300 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 SLC8B1Q6J4K2 584 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 GLYCTKQ8IVS8 523 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 EFHBQ8N7U6 833 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 ZNF461Q8TAF7 563 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 PPM1EQ8WY54 764 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 MRPL45Q9BRJ2 306 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 CRACR2AQ9BSW2 395 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 INTS2Q9H0H0 1204 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 HSD3B7Q9H2F3 369 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 FAM124BQ9H5Z6 455 aaPredicted RBP12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 APOBEC3GQ9HC16 384 aaKnown RBP12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 MAFFQ9ULX9 164 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 STXBP5LQ9Y2K9 1186 aa12.74□□□□□ -0.37
SPTLC1-202ENST00000337841 A8MXQ7 604 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 LRRN2O75325 713 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 GLUD1P00367 558 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 PDGFRBP09619 1106 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 ATP1A3P13637 1013 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 CPB1P15086 417 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 UBXN1Q04323 297 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 SMARCB1Q12824 385 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 GPR17Q13304 367 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 ADAM15Q13444 863 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 RSPO2Q6UXX9 243 aaPredicted RBP12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 SCARA5Q6ZMJ2 495 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 EP400NLQ6ZTU2 488 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 UNC93AQ86WB7 457 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 PPM1KQ8N3J5 372 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 LMO3Q8TAP4 145 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 SLC22A17Q8WUG5 538 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 HDAC7Q8WUI4 952 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 CASP10Q92851 521 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 ELMO3Q96BJ8 720 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 BCO2Q9BYV7 579 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 ZCWPW1Q9H0M4 648 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 PLEKHA4Q9H4M7 779 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 SMYD3Q9H7B4 428 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 GCNT4Q9P109 453 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 CDH9Q9ULB4 789 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 RALGAPA2Q2PPJ7 1873 aa12.73□□□□□ -0.37
SPTLC1-202ENST00000337841 TRIP11Q15643 1979 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 LGALS16A8MUM7 142 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 ADAM12O43184 909 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 TGM5O43548 720 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 ABLIM3O94929 683 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 SLC9A1P19634 815 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 LMO2P25791 158 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 PON1P27169 355 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 ASPAP45381 313 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 CLCN4P51793 760 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 MFAP3P55082 362 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 CUL2Q13617 745 aa12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 MAPRE1Q15691 268 aaKnown RBP12.72□□□□□ -0.37
SPTLC1-202ENST00000337841 NFE2Q16621 373 aaPredicted RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms