RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ADCY3O60266 1144 aa17.58■□□□□ 0.41
VPS54-201ENST00000272322 TGFB2P61812 414 aa17.58■□□□□ 0.41
VPS54-201ENST00000272322 SH3PXD2AQ5TCZ1 1133 aa17.58■□□□□ 0.41
VPS54-201ENST00000272322 PARVAQ9NVD7 372 aa17.58■□□□□ 0.41
VPS54-201ENST00000272322 MAP3K20Q9NYL2 800 aaKnown RBP17.58■□□□□ 0.41
VPS54-201ENST00000272322 KIAA1217Q5T5P2 1943 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 USP2O75604 605 aaPredicted RBP17.58■□□□□ 0.4
VPS54-201ENST00000272322 AGTP01019 485 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 PECAM1P16284 738 aaPredicted RBP17.58■□□□□ 0.4
VPS54-201ENST00000272322 ITIH2P19823 946 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 ZNF252P-AS1Q0IIN9 211 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 CYP1B1Q16678 543 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 ANKRD20A8PQ5CZ79 823 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 TAOK1Q7L7X3 1001 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 NETO2Q8NC67 525 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 CGRRF1Q99675 332 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 TRAIPQ9BWF2 469 aa17.58■□□□□ 0.4
VPS54-201ENST00000272322 CNOT10Q9H9A5 744 aaKnown RBP17.58■□□□□ 0.4
VPS54-201ENST00000272322 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.58■□□□□ 0.4
VPS54-201ENST00000272322 MYH9P35579 1960 aaKnown RBP17.58■□□□□ 0.4
VPS54-201ENST00000272322 ITGBL1O95965 494 aaPredicted RBP17.57■□□□□ 0.4
VPS54-201ENST00000272322 ARL2P36404 184 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 RGS7P49802 495 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 SLFN12LQ6IEE8 588 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 SCYL2Q6P3W7 929 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 C6orf89Q6UWU4 347 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 ENOSF1Q7L5Y1 443 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 ANKS4BQ8N8V4 417 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 SEPT1Q8WYJ6 367 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 ZNF317Q96PQ6 595 aaPredicted RBP17.57■□□□□ 0.4
VPS54-201ENST00000272322 ATAD5Q96QE3 1844 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 VTNP04004 478 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 MAGEA4P43358 317 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 SNRPFP62306 86 aaKnown RBP17.57■□□□□ 0.4
VPS54-201ENST00000272322 EFTUD2Q15029 972 aaKnown RBP eCLIP17.57■□□□□ 0.42e-6■□□□□ 10.5
VPS54-201ENST00000272322 RUNDC3BQ96NL0 473 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 SPATC1LQ9H0A9 340 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 CSADQ9Y600 493 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 C19orf81C9J6K1 198 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 GDF10P55107 478 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 PSMC1P62191 440 aaKnown RBP17.57■□□□□ 0.4
VPS54-201ENST00000272322 ATP11AP98196 1134 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 PDIA2Q13087 525 aaKnown RBP17.57■□□□□ 0.4
VPS54-201ENST00000272322 DUOXA2Q1HG44 320 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 GPATCH11Q8N954 259 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 RDM1Q8NG50 284 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 MORC4Q8TE76 937 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 HOMER3Q9NSC5 361 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 PNMA3Q9UL41 463 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 LAMA3Q16787 3333 aa17.57■□□□□ 0.4
VPS54-201ENST00000272322 SSTR1P30872 391 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 DNAJC3Q13217 504 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 FAXCQ5TGI0 409 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 ICE2Q659A1 982 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 WDTC1Q8N5D0 677 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 TWNKQ96RR1 684 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 ASCC2Q9H1I8 757 aaPredicted RBP17.56■□□□□ 0.4
VPS54-201ENST00000272322 KIAA1586Q9HCI6 787 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 SLCO1B3Q9NPD5 702 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 KLC4Q9NSK0 619 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 CST8O60676 142 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 ITGB3P05106 788 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 CETN2P41208 172 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 AMHR2Q16671 573 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 EFCAB12Q6NXP0 572 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 VSTM1Q6UX27 236 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 CCDC89Q8N998 374 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 MRPL4Q9BYD3 311 aaKnown RBP17.56■□□□□ 0.4
VPS54-201ENST00000272322 RNPEPQ9H4A4 650 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 SMYD3Q9H7B4 428 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 NFICP08651 508 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 IQCF3P0C7M6 154 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 MMRN1Q13201 1228 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 CLUL1Q15846 466 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 TGS1Q96RS0 853 aaKnown RBP17.56■□□□□ 0.4
VPS54-201ENST00000272322 GPATCH2LQ9NWQ4 482 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 CYTH4Q9UIA0 394 aa17.56■□□□□ 0.4
VPS54-201ENST00000272322 MSCO60682 206 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 TOM1L1O75674 476 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 MMP8P22894 467 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 BASP1P80723 227 aaKnown RBP17.55■□□□□ 0.4
VPS54-201ENST00000272322 BBS9Q3SYG4 887 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 PTPN20Q4JDL3 420 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 EMC10Q5UCC4 262 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 NPNTQ6UXI9 565 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 KIAA0319LQ8IZA0 1049 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 TMEM35BQ8NCS4 154 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 LPIN3Q9BQK8 851 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 METTL5Q9NRN9 209 aaKnown RBP17.55■□□□□ 0.4
VPS54-201ENST00000272322 WHRNQ9P202 907 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 AKT3Q9Y243 479 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 UBOX5O94941 541 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 TXNP10599 105 aaKnown RBP17.55■□□□□ 0.4
VPS54-201ENST00000272322 CYP2C8P10632 490 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 KRT3P12035 628 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 IL1R2P27930 398 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 SLC1A1P43005 524 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 GHRHRQ02643 423 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 C12orf29Q8N999 325 aa17.55■□□□□ 0.4
VPS54-201ENST00000272322 ACTL9Q8TC94 416 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms