RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 KIF20BQ96Q89 1820 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 MEGF6O75095 1541 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 IGF2BP3O00425 579 aaKnown RBP eCLIP11.25□□□□□ -0.61
CD44-201ENST00000263398 ANGPT2O15123 496 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 HADHAP40939 763 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 SMTNL2Q2TAL5 461 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 NBPF20Q3BBV1 942 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 PRUNE1Q86TP1 453 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 LRRC6Q86X45 466 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 DNAJC9Q8WXX5 260 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 TSPAN17Q96FV3 270 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 ZC3H11AO75152 810 aaKnown RBP eCLIP11.25□□□□□ -0.61
CD44-201ENST00000263398 RARBP10826 455 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 MDH1BQ5I0G3 518 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 TTC39BQ5VTQ0 682 aaPredicted RBP11.25□□□□□ -0.61
CD44-201ENST00000263398 PTPRN2Q92932 1015 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 RMDN2Q96LZ7 410 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 MRPL1Q9BYD6 325 aaKnown RBP11.25□□□□□ -0.61
CD44-201ENST00000263398 RIOX1Q9H6W3 641 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 TMBIM4Q9HC24 238 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 MTSS1O43312 755 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 HBP1O60381 514 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 AKAP3O75969 853 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 ENO3P13929 434 aaPredicted RBP11.25□□□□□ -0.61
CD44-201ENST00000263398 HNRNPH1P31943 449 aaKnown RBP11.25□□□□□ -0.61
CD44-201ENST00000263398 RAD51Q06609 339 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 MTM1Q13496 603 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 MYBPC2Q14324 1141 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 INPP5AQ14642 412 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 CBWD2Q8IUF1 395 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 ATP8B4Q8TF62 1192 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 SCFD2Q8WU76 684 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 NSMCE4AQ9NXX6 385 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 TJP2Q9UDY2 1190 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 RAB21Q9UL25 225 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 CDY2AQ9Y6F7 541 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 CDY1Q9Y6F8 540 aa11.25□□□□□ -0.61
CD44-201ENST00000263398 NEMP1O14524 444 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 PDGFRBP09619 1106 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 LBRQ14739 615 aaKnown RBP11.24□□□□□ -0.61
CD44-201ENST00000263398 ANO4Q32M45 955 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 MEI1Q5TIA1 1274 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 C16orf87Q6PH81 154 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 C1orf131Q8NDD1 294 aaKnown RBP11.24□□□□□ -0.61
CD44-201ENST00000263398 CAVIN3Q969G5 261 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 NSL1Q96IY1 281 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 TAAR1Q96RJ0 339 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 TASP1Q9H6P5 420 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 ANKZF1Q9H8Y5 726 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 FAM49BQ9NUQ9 324 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 TRIM49D1C9J1S8 452 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 GAS2O43903 313 aaKnown RBP11.24□□□□□ -0.61
CD44-201ENST00000263398 SGPL1O95470 568 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 ICAM1P05362 532 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 CYP11B1P15538 503 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 BRD2P25440 801 aaKnown RBP11.24□□□□□ -0.61
CD44-201ENST00000263398 INTS5Q6P9B9 1019 aaKnown RBP11.24□□□□□ -0.61
CD44-201ENST00000263398 TAS2R42Q7RTR8 314 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 ZNF571Q7Z3V5 609 aaPredicted RBP11.24□□□□□ -0.61
CD44-201ENST00000263398 SETD3Q86TU7 594 aaPredicted RBP11.24□□□□□ -0.61
CD44-201ENST00000263398 FAM71DQ8N9W8 422 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 CHST13Q8NET6 341 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 OR6J1Q8NGC5 347 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 FBXO28Q9NVF7 368 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 WHRNQ9P202 907 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 ARHGAP26Q9UNA1 814 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 AURKCQ9UQB9 309 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 EEF2KO00418 725 aaKnown RBP11.24□□□□□ -0.61
CD44-201ENST00000263398 TRAPPC3O43617 180 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 ZBTB7AO95365 584 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 GH1P01241 217 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 CPB1P15086 417 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 NNMTP40261 264 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 TRIP10Q15642 601 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 EFHC1Q5JVL4 640 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 RNF217Q8TC41 542 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 ATG4CQ96DT6 458 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 PPP1R2P1Q96PQ5 205 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 FRMD8P1Q9BZ68 369 aaPredicted RBP11.24□□□□□ -0.61
CD44-201ENST00000263398 NDFIP2Q9NV92 336 aa11.24□□□□□ -0.61
CD44-201ENST00000263398 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.24□□□□□ -0.61
CD44-201ENST00000263398 F8VZ95 297 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 MYL2P10916 166 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 GARTP22102 1010 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 HDAC4P56524 1084 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 KCNA1Q09470 495 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 EZH2Q15910 746 aaKnown RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 CYB5D1Q6P9G0 228 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 TTC23LQ6PF05 361 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 ZNF720Q7Z2F6 126 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 ARID3BQ8IVW6 561 aaPredicted RBP11.23□□□□□ -0.61
CD44-201ENST00000263398 ATPAF2Q8N5M1 289 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 CBWD1Q9BRT8 395 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 OLFML3Q9NRN5 406 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 ARHGEF38Q9NXL2 777 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 ZNF212Q9UDV6 495 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 H3BQF6 201 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 ZNF197O14709 1029 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 OGTO15294 1046 aa11.23□□□□□ -0.61
CD44-201ENST00000263398 CYP2C8P10632 490 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms