RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MTIF3Q9H2K0 278 aaKnown RBP12.25□□□□□ -0.45
VPS4A-201ENST00000254950 CWC15Q9P013 229 aaKnown RBP12.25□□□□□ -0.45
VPS4A-201ENST00000254950 TXNDC16Q9P2K2 825 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 ZNF185O15231 689 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 F2P00734 622 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 ASS1P00966 412 aaKnown RBP12.25□□□□□ -0.45
VPS4A-201ENST00000254950 INHAP05111 366 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 FAM200BP0CF97 657 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 MAPRE1Q15691 268 aaKnown RBP12.25□□□□□ -0.45
VPS4A-201ENST00000254950 KCND1Q9NSA2 647 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 HAUS2Q9NVX0 235 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 KANSL3Q9P2N6 904 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 CPSF3Q9UKF6 684 aaKnown RBP12.25□□□□□ -0.45
VPS4A-201ENST00000254950 TTLL3Q9Y4R7 772 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 TSPAN1O60635 241 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 POMCP01189 267 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 PAEPP09466 180 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 RRM1P23921 792 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 NDST1P52848 882 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 SARNPP82979 210 aaKnown RBP12.25□□□□□ -0.45
VPS4A-201ENST00000254950 SLC7A5Q01650 507 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 DENND2CQ68D51 928 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 USP38Q8NB14 1042 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 CCHCR1Q8TD31 782 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 DEFB118Q96PH6 123 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 DDX47Q9H0S4 455 aaKnown RBP12.25□□□□□ -0.45
VPS4A-201ENST00000254950 PDZD7Q9H5P4 517 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 CREBZFQ9NS37 354 aa12.25□□□□□ -0.45
VPS4A-201ENST00000254950 IGKV6D-21A0A0A0MT36 114 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 CASTOR2A6NHX0 329 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 PJA2O43164 708 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 ZBTB41Q5SVQ8 909 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 FAM117BQ6P1L5 589 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 SEMA4DQ92854 862 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 FAM84AQ96KN4 292 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 PPP1R12CQ9BZL4 782 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 SENP6Q9GZR1 1112 aaPredicted RBP12.24□□□□□ -0.45
VPS4A-201ENST00000254950 OGFRQ9NZT2 677 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 KPNA7A9QM74 516 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 PODXLO00592 558 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 HOXD13P35453 343 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 LHX1P48742 406 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 C1QBPQ07021 282 aaKnown RBP12.24□□□□□ -0.45
VPS4A-201ENST00000254950 IRF5Q13568 498 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 PAN2Q504Q3 1202 aaKnown RBP12.24□□□□□ -0.45
VPS4A-201ENST00000254950 CYP4A22Q5TCH4 519 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 DARS2Q6PI48 645 aaKnown RBP12.24□□□□□ -0.45
VPS4A-201ENST00000254950 C4orf50Q6ZRC1 276 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 IRF2BP2Q7Z5L9 587 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 EMID1Q96A84 441 aaPredicted RBP12.24□□□□□ -0.45
VPS4A-201ENST00000254950 CD52P31358 61 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 ARHGAP25P42331 645 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 PLTPP55058 493 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 ZNF200P98182 395 aaPredicted RBP12.24□□□□□ -0.45
VPS4A-201ENST00000254950 BZW1Q7L1Q6 419 aaKnown RBP12.24□□□□□ -0.45
VPS4A-201ENST00000254950 CHST12Q9NRB3 414 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 DSEQ9UL01 958 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 FAM169AQ9Y6X4 670 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 UMODL1Q5DID0 1318 aa12.24□□□□□ -0.45
VPS4A-201ENST00000254950 NOL4O94818 638 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 CHRNA3P32297 505 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 GRIK1P39086 918 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 BCAT1P54687 386 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 MRPS25P82663 173 aaKnown RBP12.23□□□□□ -0.45
VPS4A-201ENST00000254950 C2CD6Q53TS8 623 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 CCNYQ8ND76 341 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 TTYH3Q9C0H2 523 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 CARD9Q9H257 536 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 NXF3Q9H4D5 531 aaKnown RBP12.23□□□□□ -0.45
VPS4A-201ENST00000254950 SLITRK6Q9H5Y7 841 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 L2HGDHQ9H9P8 463 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 ADAMTSL1Q8N6G6 1762 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 ECM29Q5VYK3 1845 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 CDH6P55285 790 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 DNAAF5Q86Y56 855 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 TMEM139Q8IV31 216 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 MICAL1Q8TDZ2 1067 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 VCPIP1Q96JH7 1222 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 IQCGQ9H095 443 aaKnown RBP12.23□□□□□ -0.45
VPS4A-201ENST00000254950 OSGEPQ9NPF4 335 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 FAM105AQ9NUU6 356 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 VPS18Q9P253 973 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 GABRQQ9UN88 632 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 TELO2Q9Y4R8 837 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 MOXD2PA6NHM9 499 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 C4BPAP04003 597 aaKnown RBP12.23□□□□□ -0.45
VPS4A-201ENST00000254950 SETSIPP0DME0 302 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 CTNNA1P35221 906 aaKnown RBP12.23□□□□□ -0.45
VPS4A-201ENST00000254950 KRT71Q3SY84 523 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 EFHC1Q5JVL4 640 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 BTBD8Q5XKL5 378 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 MCOLN2Q8IZK6 566 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 MS4A14Q96JA4 679 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 SEPT10Q9P0V9 454 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 DERAQ9Y315 318 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 ZMYM2Q9UBW7 1377 aa12.23□□□□□ -0.45
VPS4A-201ENST00000254950 GRAP2O75791 330 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 CSPG5O95196 566 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 ZBED1O96006 694 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 ATP5DP30049 168 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms