RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 PLEKHO2Q8TD55 490 aa24.71■■□□□ 1.55
LSM4-201ENST00000252816 CCDC47Q96A33 483 aaKnown RBP24.71■■□□□ 1.55
LSM4-201ENST00000252816 FNBP1Q96RU3 617 aa24.71■■□□□ 1.55
LSM4-201ENST00000252816 CGRRF1Q99675 332 aa24.71■■□□□ 1.55
LSM4-201ENST00000252816 CORO1BQ9BR76 489 aa24.71■■□□□ 1.55
LSM4-201ENST00000252816 AVENQ9NQS1 362 aaPredicted RBP24.71■■□□□ 1.55
LSM4-201ENST00000252816 GDAP2Q9NXN4 497 aa24.71■■□□□ 1.55
LSM4-201ENST00000252816 TNNI1P19237 187 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 KCNB1Q14721 858 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 SLC39A12Q504Y0 691 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 TRAPPC11Q7Z392 1133 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 BMP8AQ7Z5Y6 402 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 LRRTM3Q86VH5 581 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 SLC9A9Q8IVB4 645 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 THEM5Q8N1Q8 247 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 TMEM174Q8WUU8 243 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 ING5Q8WYH8 240 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 ZNF516Q92618 1163 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 SLC27A5Q9Y2P5 690 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 MRPS23Q9Y3D9 190 aaKnown RBP24.7■■□□□ 1.54
LSM4-201ENST00000252816 SNX9Q9Y5X1 595 aa24.7■■□□□ 1.54
LSM4-201ENST00000252816 ZFP37Q9Y6Q3 630 aaPredicted RBP24.7■■□□□ 1.54
LSM4-201ENST00000252816 ANHXE9PGG2 379 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 PDXKO00764 312 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 NRG2O14511 850 aaPredicted RBP24.69■■□□□ 1.54
LSM4-201ENST00000252816 CASP4P49662 377 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 PNOCQ13519 176 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 HTR4Q13639 388 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 PRSS36Q5K4E3 855 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 POTEHQ6S545 545 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 NPAS3Q8IXF0 933 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 HS6ST3Q8IZP7 471 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 PBXIP1Q96AQ6 731 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 HPDLQ96IR7 371 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 CIZ1Q9ULV3 898 aaPredicted RBP24.69■■□□□ 1.54
LSM4-201ENST00000252816 MAPK8IP1Q9UQF2 711 aa24.69■■□□□ 1.54
LSM4-201ENST00000252816 HUS1O60921 280 aa24.68■■□□□ 1.54
LSM4-201ENST00000252816 PRPF40AO75400 957 aaKnown RBP24.68■■□□□ 1.54
LSM4-201ENST00000252816 NR3C1P04150 777 aa24.68■■□□□ 1.54
LSM4-201ENST00000252816 CCR2P41597 374 aa24.68■■□□□ 1.54
LSM4-201ENST00000252816 FAM160A1Q05DH4 1040 aa24.68■■□□□ 1.54
LSM4-201ENST00000252816 OSTM1Q86WC4 334 aa24.68■■□□□ 1.54
LSM4-201ENST00000252816 TCEAL4Q96EI5 215 aa24.68■■□□□ 1.54
LSM4-201ENST00000252816 DNAJC25Q9H1X3 360 aa24.68■■□□□ 1.54
LSM4-201ENST00000252816 DUSP12Q9UNI6 340 aa24.68■■□□□ 1.54
LSM4-201ENST00000252816 NARSO43776 548 aaKnown RBP24.67■■□□□ 1.54
LSM4-201ENST00000252816 SOAT2O75908 522 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 CST3P01034 146 aaPredicted RBP24.67■■□□□ 1.54
LSM4-201ENST00000252816 PDGFBP01127 241 aaPredicted RBP24.67■■□□□ 1.54
LSM4-201ENST00000252816 CEBPBP17676 345 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 MYO1EQ12965 1108 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 SOWAHAQ2M3V2 549 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 PARM1Q6UWI2 310 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 ELMOD1Q8N336 334 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 SLC44A3Q8N4M1 653 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 TOP6BLQ8N6T0 577 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 FGF14Q92915 247 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 NXPE3Q969Y0 559 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 ZNF512Q96ME7 567 aaPredicted RBP24.67■■□□□ 1.54
LSM4-201ENST00000252816 RPP25Q9BUL9 199 aaKnown RBP24.67■■□□□ 1.54
LSM4-201ENST00000252816 R3HCC1Q9Y3T6 440 aaKnown RBP24.67■■□□□ 1.54
LSM4-201ENST00000252816 NUMBLQ9Y6R0 609 aa24.67■■□□□ 1.54
LSM4-201ENST00000252816 IQCEQ6IPM2 695 aa24.66■■□□□ 1.54
LSM4-201ENST00000252816 LIMS2Q7Z4I7 341 aa24.66■■□□□ 1.54
LSM4-201ENST00000252816 TMEM86AQ8N2M4 240 aa24.66■■□□□ 1.54
LSM4-201ENST00000252816 GUF1Q8N442 669 aaKnown RBP24.66■■□□□ 1.54
LSM4-201ENST00000252816 PARD3BQ8TEW8 1205 aa24.66■■□□□ 1.54
LSM4-201ENST00000252816 CCDC34Q96HJ3 373 aa24.66■■□□□ 1.54
LSM4-201ENST00000252816 TMLHEQ9NVH6 421 aa24.66■■□□□ 1.54
LSM4-201ENST00000252816 DDX43Q9NXZ2 648 aaKnown RBP24.66■■□□□ 1.54
LSM4-201ENST00000252816 TRAF3IP3Q9Y228 551 aa24.66■■□□□ 1.54
LSM4-201ENST00000252816 ZDBF2Q9HCK1 2354 aa24.66■■□□□ 1.54
LSM4-201ENST00000252816 HCRTO43612 131 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 MOSPD3O75425 235 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 KIF20AO95235 890 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 ACAT1P24752 427 aaKnown RBP24.65■■□□□ 1.54
LSM4-201ENST00000252816 ALDH1A3P47895 512 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 EPHA5P54756 1037 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 PLD1Q13393 1074 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 PDZD4Q76G19 769 aaPredicted RBP24.65■■□□□ 1.54
LSM4-201ENST00000252816 SMYD4Q8IYR2 804 aaPredicted RBP24.65■■□□□ 1.54
LSM4-201ENST00000252816 ADGRF2Q8IZF7 708 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 ERCC4Q92889 916 aaPredicted RBP24.65■■□□□ 1.54
LSM4-201ENST00000252816 MCRS1Q96EZ8 462 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 LRRC3Q9BY71 257 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 HSFX1Q9UBD0 423 aa24.65■■□□□ 1.54
LSM4-201ENST00000252816 LRRIQ3A6PVS8 624 aaPredicted RBP24.64■■□□□ 1.54
LSM4-201ENST00000252816 GABRDO14764 452 aa24.64■■□□□ 1.54
LSM4-201ENST00000252816 CALUO43852 315 aaPredicted RBP24.64■■□□□ 1.54
LSM4-201ENST00000252816 EPHB3P54753 998 aa24.64■■□□□ 1.54
LSM4-201ENST00000252816 CLDN10P78369 228 aa24.64■■□□□ 1.54
LSM4-201ENST00000252816 CYP4A22Q5TCH4 519 aa24.64■■□□□ 1.54
LSM4-201ENST00000252816 DCP1BQ8IZD4 617 aaKnown RBP24.64■■□□□ 1.54
LSM4-201ENST00000252816 SPATA18Q8TC71 538 aa24.64■■□□□ 1.54
LSM4-201ENST00000252816 KBTBD7Q8WVZ9 684 aa24.64■■□□□ 1.54
LSM4-201ENST00000252816 SEPT5Q99719 369 aaPredicted RBP24.64■■□□□ 1.54
LSM4-201ENST00000252816 ACBD6Q9BR61 282 aa24.64■■□□□ 1.54
LSM4-201ENST00000252816 ASAH2Q9NR71 780 aa24.64■■□□□ 1.54
LSM4-201ENST00000252816 GDE1Q9NZC3 331 aa24.64■■□□□ 1.54
LSM4-201ENST00000252816 ZNF318Q5VUA4 2279 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms