RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 IPMKQ8NFU5 416 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 ATL2Q8NHH9 583 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 ARHGEF26Q96DR7 871 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 ADA2Q9NZK5 511 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-219ENST00000620786 SFMBT1Q9UHJ3 866 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 KDM1AO60341 852 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 DDHD2O94830 711 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 RHOBTB3O94955 611 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 NFIAQ12857 509 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 SFSWAPQ12872 951 aaKnown RBP11.93□□□□□ -0.5
CLIP1-219ENST00000620786 OOSP2Q86WS3 158 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 SHCBP1Q8NEM2 672 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 UCMAQ8WVF2 138 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 SCHIP1Q9P0W5 487 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-219ENST00000620786 IPPQ9Y573 584 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 CFAP99D6REC4 459 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 B3GAT3O94766 335 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 CLCN6P51797 869 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 PDIA6Q15084 440 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 PDK1Q15118 436 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 ITSN1Q15811 1721 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 FBXO32Q969P5 355 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 CD274Q9NZQ7 290 aa11.93□□□□□ -0.5
CLIP1-219ENST00000620786 XPO7Q9UIA9 1087 aaKnown RBP11.93□□□□□ -0.5
CLIP1-219ENST00000620786 TPX2Q9ULW0 747 aaKnown RBP11.93□□□□□ -0.5
CLIP1-219ENST00000620786 ESYT3A0FGR9 886 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 NKRFO15226 690 aaKnown RBP eCLIP11.92□□□□□ -0.56e-6■■□□□ 12.6
CLIP1-219ENST00000620786 SH3BGRP55822 239 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 ADSSL1Q8N142 457 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 HASPINQ8TF76 798 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 KRT35Q92764 455 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 OTUB1Q96FW1 271 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 TMEM39AQ9NV64 488 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 ZC3H13Q5T200 1668 aaKnown RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 SUPT3HB4E1H0 165 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 GYG2O15488 501 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 SUPT3HO75486 399 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 AP1G2O75843 785 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 UCHL3P15374 230 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 MAGOHP61326 146 aaKnown RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 CARNMT1Q8N4J0 409 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 AKT1S1Q96B36 256 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 NRBF2Q96F24 287 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 PXMP2Q9NR77 195 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 LIMA1Q9UHB6 759 aaKnown RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 ADM5C9JUS6 153 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 ZNF263O14978 683 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 ZNF513Q8N8E2 541 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 RFWD2Q8NHY2 731 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 PPP1R36Q96LQ0 422 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 GLIS2Q9BZE0 524 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 RAB6BQ9NRW1 208 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 DCTN4Q9UJW0 460 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 FBXL5Q9UKA1 691 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 FHOD1Q9Y613 1164 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 F5H5T6 163 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 CYB561D2O14569 222 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 DNAJB2P25686 324 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 EPHB3P54753 998 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 PRKCQQ04759 706 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 TAGAPQ8N103 731 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 MEFVO15553 781 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 ARIH2O95376 493 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 FGFR4P22455 802 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 SYDE1Q6ZW31 735 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 GMCL1P1Q8NEA9 526 aa11.92□□□□□ -0.5
CLIP1-219ENST00000620786 TAF1DQ9H5J8 278 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 CHCHD3Q9NX63 227 aaKnown RBP11.92□□□□□ -0.5
CLIP1-219ENST00000620786 PITPNM2Q9BZ72 1349 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 MAP3K13O43283 966 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 RPLP2P05387 115 aaKnown RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 KRT72Q14CN4 511 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 MPZL3Q6UWV2 235 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 MTG1Q9BT17 334 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 C20orf96Q9NUD7 363 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 TRIM17Q9Y577 477 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 TBKBP1A7MCY6 615 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 C5orf58C9J3I9 102 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 ZSCAN9O15535 394 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 RNASEH1O60930 286 aaKnown RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 SLC2A3P11169 496 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 RFX5P48382 616 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 PDCLQ13371 301 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 USP10Q14694 798 aaKnown RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 TGS1Q96RS0 853 aaKnown RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 APOL5Q9BWW9 433 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 STN1Q9H668 368 aaKnown RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 WDCPQ9H6R7 721 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 PCDHB2Q9Y5E7 798 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 BCORL1Q5H9F3 1711 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 BRAFP15056 766 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 RAG1P15918 1043 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 GALCP54803 685 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 POLD3Q15054 466 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-219ENST00000620786 SMTNL2Q2TAL5 461 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 EDRF1Q3B7T1 1238 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 CD302Q8IX05 232 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 ADGRF2Q8IZF7 708 aa11.91□□□□□ -0.5
CLIP1-219ENST00000620786 KCTD17Q8N5Z5 321 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms