RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 HKR1P10072 659 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 EGR2P11161 476 aaPredicted RBP8.06□□□□□ -1.12
SS18-214ENST00000580003 POU6F2P78424 691 aaPredicted RBP8.06□□□□□ -1.12
SS18-214ENST00000580003 FPGSQ05932 587 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 MINDY4Q4G0A6 757 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 B3GNT9Q6UX72 402 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 Q6ZPA2 131 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 GPR149Q86SP6 731 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 DAAM2Q86T65 1068 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 PPP1R3BQ86XI6 285 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 DDX17Q92841 729 aaKnown RBP8.06□□□□□ -1.12
SS18-214ENST00000580003 CAVIN3Q969G5 261 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 ACO2Q99798 780 aaKnown RBP8.06□□□□□ -1.12
SS18-214ENST00000580003 ARMT1Q9H993 441 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 UNKLQ9H9P5 680 aaKnown RBP8.06□□□□□ -1.12
SS18-214ENST00000580003 GPR35Q9HC97 309 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 METTL14Q9HCE5 456 aaKnown RBP8.06□□□□□ -1.12
SS18-214ENST00000580003 CNNM1Q9NRU3 951 aa8.06□□□□□ -1.12
SS18-214ENST00000580003 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.06□□□□□ -1.12
SS18-214ENST00000580003 TRGV11A0A075B6L2 103 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 A0A087X1B8 175 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 PRAMEF33A0A0G2JMD5 474 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 POLRMTO00411 1230 aaKnown RBP8.05□□□□□ -1.12
SS18-214ENST00000580003 TOR1BO14657 336 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 TSPAN6O43657 245 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 CTNND1O60716 968 aaKnown RBP8.05□□□□□ -1.12
SS18-214ENST00000580003 PRAMEF10O60809 474 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 AHSGP02765 367 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 KRT4P19013 534 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 FDXRP22570 491 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 HTR1BP28222 390 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 RPS7P62081 194 aaKnown RBP8.05□□□□□ -1.12
SS18-214ENST00000580003 PREPLQ4J6C6 727 aaPredicted RBP8.05□□□□□ -1.12
SS18-214ENST00000580003 HECTD2Q5U5R9 776 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 NXNQ6DKJ4 435 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 TAPT1Q6NXT6 567 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 Q6YL49 198 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 TCEAL8Q8IYN2 117 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 Q8NA96 180 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 NSUN7Q8NE18 718 aaKnown RBP8.05□□□□□ -1.12
SS18-214ENST00000580003 FUBP1Q96AE4 644 aaKnown RBP8.05□□□□□ -1.12
SS18-214ENST00000580003 TMEM125Q96AQ2 219 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 CHFRQ96EP1 664 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 PTCD3Q96EY7 689 aaKnown RBP8.05□□□□□ -1.12
SS18-214ENST00000580003 TRIB1Q96RU8 372 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 CNPPD1Q9BV87 410 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 CASS4Q9NQ75 786 aa8.05□□□□□ -1.12
SS18-214ENST00000580003 GRID2IPA4D2P6 1211 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 PRSS29PA6NIE9 313 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 E9PLN8 166 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 UBXN7O94888 489 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 RHOBTB3O94955 611 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 ZFPL1O95159 310 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 GCP02774 474 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 HABP2Q14520 560 aaPredicted RBP8.04□□□□□ -1.12
SS18-214ENST00000580003 MLC1Q15049 377 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 KHDC1LQ5JSQ8 128 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 SP5Q6BEB4 398 aaPredicted RBP8.04□□□□□ -1.12
SS18-214ENST00000580003 ZBTB34Q8NCN2 500 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 PPP1R35Q8TAP8 253 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 COQ10AQ96MF6 247 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 VKORC1Q9BQB6 163 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 CTTNBP2NLQ9P2B4 639 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 PCDHA6Q9UN73 950 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 DMTF1Q9Y222 760 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 COL4A3Q01955 1670 aa8.04□□□□□ -1.12
SS18-214ENST00000580003 TGM1P22735 817 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 ANXA11P50995 505 aaKnown RBP8.03□□□□□ -1.12
SS18-214ENST00000580003 EXOSC9Q06265 439 aaKnown RBP8.03□□□□□ -1.12
SS18-214ENST00000580003 SCAPQ12770 1279 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 DYRK1AQ13627 763 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 FGL2Q14314 439 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 MAGEB6Q8N7X4 407 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 BEND2Q8NDZ0 799 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 Q96MF0 132 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 KRTAP4-2Q9BYR5 136 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 TINAGL1Q9GZM7 467 aaPredicted RBP8.03□□□□□ -1.12
SS18-214ENST00000580003 RSAD1Q9HA92 442 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 GABBR1Q9UBS5 961 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 CPA4Q9UI42 421 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 PACSIN3Q9UKS6 424 aa8.03□□□□□ -1.12
SS18-214ENST00000580003 E7ENX8 843 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 ERC2O15083 957 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 PRPF3O43395 683 aaKnown RBP8.02□□□□□ -1.13
SS18-214ENST00000580003 SUN1O94901 812 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 KCNJ5P48544 419 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 RAB1AP62820 205 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 TAP2Q03519 686 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 CD300EQ496F6 205 aaPredicted RBP8.02□□□□□ -1.13
SS18-214ENST00000580003 CRB2Q5IJ48 1285 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 SLC30A10Q6XR72 485 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 USP37Q86T82 979 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 MYO1HQ8N1T3 1032 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 PLBD2Q8NHP8 589 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 SNX19Q92543 992 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 RUNDC1Q96C34 613 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 IKZF4Q9H2S9 585 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 TOR3AQ9H497 397 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 INTS13Q9NVM9 706 aa8.02□□□□□ -1.13
SS18-214ENST00000580003 SYBUQ9NX95 663 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms