RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 MTHFD1LQ6UB35 978 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 LCA5Q86VQ0 697 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 FAM71DQ8N9W8 422 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 CXorf38Q8TB03 319 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 FBXO25Q8TCJ0 367 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 MAGEB5Q9BZ81 275 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 KIF9Q9HAQ2 790 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 RIMBP3CA6NJZ7 1639 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 RIMBP3BA6NNM3 1639 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 RIMBP3Q9UFD9 1639 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 PJA2O43164 708 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 GZMAP12544 262 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 CREG2Q8IUH2 290 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 ARHGAP18Q8N392 663 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 SNX9Q9Y5X1 595 aa16.11■□□□□ 0.17
CIITA-204ENST00000570546 ASB14A6NK59 587 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 C19orf81C9J6K1 198 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 CES2O00748 559 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 MAP2K7O14733 419 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 SNRPAP09012 282 aaKnown RBP16.1■□□□□ 0.17
CIITA-204ENST00000570546 RPS6P62753 249 aaKnown RBP16.1■□□□□ 0.17
CIITA-204ENST00000570546 SCN4BQ8IWT1 228 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 GMCL1Q96IK5 515 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 TNIP3Q96KP6 325 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 EHD4Q9H223 541 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 GRAP2O75791 330 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 FAM153BP0C7A2 387 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 FAM153CQ494X1 144 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 ATF7IP2Q5U623 682 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 TARS2Q9BW92 718 aaKnown RBP16.1■□□□□ 0.17
CIITA-204ENST00000570546 GDF3Q9NR23 364 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 BLOC1S4Q9NUP1 217 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 FAM153AQ9UHL3 310 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 SNX2O60749 519 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 GPD1P21695 349 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 AARSP49588 968 aaKnown RBP eCLIP16.1■□□□□ 0.17
CIITA-204ENST00000570546 PTENP60484 403 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 RARS2Q5T160 578 aaKnown RBP16.1■□□□□ 0.17
CIITA-204ENST00000570546 GPRASP2Q96D09 838 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 MAGEB18Q96M61 343 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 ZBTB18Q99592 522 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 LBHD1Q9BQE6 289 aaPredicted RBP16.1■□□□□ 0.17
CIITA-204ENST00000570546 CXorf56Q9H5V9 222 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 TRAF3IP3Q9Y228 551 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 SERPINB4P48594 390 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 RNF135Q8IUD6 432 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 MICALL2Q8IY33 904 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 CEP70Q8NHQ1 597 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 ACER1Q8TDN7 264 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 CDC42EP4Q9H3Q1 356 aaKnown RBP16.1■□□□□ 0.17
CIITA-204ENST00000570546 OLFML3Q9NRN5 406 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 KRT82Q9NSB4 513 aa16.1■□□□□ 0.17
CIITA-204ENST00000570546 DFFAO00273 331 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 RBP3P10745 1247 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 ITGA4P13612 1032 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 CTCFP49711 727 aaPredicted RBP16.09■□□□□ 0.17
CIITA-204ENST00000570546 TPI1P60174 286 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 BTNL9Q6UXG8 535 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 TEX9Q8N6V9 391 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 ZDHHC15Q96MV8 337 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 FBXO28Q9NVF7 368 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 PHTF1Q9UMS5 762 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 DNAJC8O75937 253 aaPredicted RBP16.09■□□□□ 0.17
CIITA-204ENST00000570546 IL1R1P14778 569 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 DYNC1I2Q13409 638 aaKnown RBP16.09■□□□□ 0.17
CIITA-204ENST00000570546 C11orf63Q6NUN7 778 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 FRA10AC1Q70Z53 315 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 NUDT12Q9BQG2 462 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 LOC102724159A0A0B4J2E5 919 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 MGEA5O60502 916 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 PWP2Q15269 919 aaKnown RBP16.09■□□□□ 0.17
CIITA-204ENST00000570546 SLC47A2Q86VL8 602 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 PPP1R36Q96LQ0 422 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 SIK2Q9H0K1 926 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 SMARCAD1Q9H4L7 1026 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 RIC1Q4ADV7 1423 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 NQO1P15559 274 aaKnown RBP16.09■□□□□ 0.17
CIITA-204ENST00000570546 PPARGP37231 505 aaPredicted RBP16.09■□□□□ 0.17
CIITA-204ENST00000570546 C2CD6Q53TS8 623 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 RABGAP1LQ5R372 815 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 ZNF507Q8TCN5 953 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 KDM4CQ9H3R0 1056 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 PLEKHA5Q9HAU0 1116 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 MST1RQ04912 1400 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 KRT4P19013 534 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 XPAP23025 273 aaPredicted RBP16.09■□□□□ 0.17
CIITA-204ENST00000570546 TARSP26639 723 aaKnown RBP16.09■□□□□ 0.17
CIITA-204ENST00000570546 STYK1Q6J9G0 422 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 ARMC2Q8NEN0 867 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 UBA3Q8TBC4 463 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 NSL1Q96IY1 281 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 AGAP3Q96P47 875 aa16.09■□□□□ 0.17
CIITA-204ENST00000570546 JCADQ9P266 1359 aa16.08■□□□□ 0.17
CIITA-204ENST00000570546 RIMS1Q86UR5 1692 aaKnown RBP16.08■□□□□ 0.16
CIITA-204ENST00000570546 EEF1DP29692 281 aaKnown RBP16.08■□□□□ 0.16
CIITA-204ENST00000570546 MAPRE2Q15555 327 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 DNAJC9Q8WXX5 260 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 POP1Q99575 1024 aaKnown RBP16.08■□□□□ 0.16
CIITA-204ENST00000570546 YY1AP1Q9H869 796 aa16.08■□□□□ 0.16
CIITA-204ENST00000570546 XAB2Q9HCS7 855 aaKnown RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms