RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 PPEF2O14830 753 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 TRAK2O60296 914 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 TYMPP19971 482 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 VIPR2P41587 438 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 DUSP4Q13115 394 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 PLD1Q13393 1074 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 OVOS1Q6IE37 1185 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 SLC39A4Q6P5W5 647 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 TMC8Q8IU68 726 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 FIZ1Q96SL8 496 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 MSTO1Q9BUK6 570 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 GPR88Q9GZN0 384 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 DNAJC25Q9H1X3 360 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 ZSCAN32Q9NX65 697 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 CPSF3Q9UKF6 684 aaKnown RBP16.21■□□□□ 0.19
CLN3-236ENST00000568558 NDRG2Q9UN36 371 aaKnown RBP16.21■□□□□ 0.19
CLN3-236ENST00000568558 SMC3Q9UQE7 1217 aa16.21■□□□□ 0.19
CLN3-236ENST00000568558 MTMR11A4FU01 709 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 LILRB5O75023 590 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 PLCG1P19174 1290 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 LONP1P36776 959 aaKnown RBP16.2■□□□□ 0.18
CLN3-236ENST00000568558 EPHB3P54753 998 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 LILRA4P59901 499 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 GTF2BQ00403 316 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 GRIN1Q05586 938 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 MTAPQ13126 283 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 MYBPC2Q14324 1141 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 MCM6Q14566 821 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 JADE1Q6IE81 842 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 CENPPQ6IPU0 288 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 TSSK4Q6SA08 328 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 MFSD6LQ8IWD5 586 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 CD302Q8IX05 232 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 ATRIPQ8WXE1 791 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 RAD54LQ92698 747 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 CHRDQ9H2X0 955 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 PIAS3Q9Y6X2 628 aa16.2■□□□□ 0.18
CLN3-236ENST00000568558 A0A1W2PRU2 124 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 HEPACAM2A8MVW5 462 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 ARNTLO00327 626 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 ZNF263O14978 683 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 BMP15O95972 392 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 KRT18P05783 430 aaKnown RBP16.19■□□□□ 0.18
CLN3-236ENST00000568558 ODC1P11926 461 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 NMT1P30419 496 aaKnown RBP16.19■□□□□ 0.18
CLN3-236ENST00000568558 KARSQ15046 597 aaKnown RBP16.19■□□□□ 0.18
CLN3-236ENST00000568558 C9orf57Q5W0N0 161 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 RASSF8Q8NHQ8 419 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 FAM3CQ92520 227 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 E2F7Q96AV8 911 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 RSPRY1Q96DX4 576 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 FAM212AQ96EL1 285 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 SENP8Q96LD8 212 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 TMEM209Q96SK2 561 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 EPC1Q9H2F5 836 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 ZHX3Q9H4I2 956 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 SLITRK6Q9H5Y7 841 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 SLC27A5Q9Y2P5 690 aa16.19■□□□□ 0.18
CLN3-236ENST00000568558 ANKRD63C9JTQ0 380 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 PIRO00625 290 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 TBCAO75347 108 aaKnown RBP16.18■□□□□ 0.18
CLN3-236ENST00000568558 NFICP08651 508 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 PAX3P23760 479 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 ABCD1P33897 745 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 ALDH1A3P47895 512 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 MCM2P49736 904 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 LARP1BQ659C4 914 aaKnown RBP16.18■□□□□ 0.18
CLN3-236ENST00000568558 MAMSTRQ6ZN01 415 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 BRAPQ7Z569 592 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 TTC9BQ8N6N2 239 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 ATAD1Q8NBU5 361 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 LARP4BQ92615 738 aaKnown RBP16.18■□□□□ 0.18
CLN3-236ENST00000568558 IER2Q9BTL4 223 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 FAM126AQ9BYI3 521 aaPredicted RBP16.18■□□□□ 0.18
CLN3-236ENST00000568558 NCDNQ9UBB6 729 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 SMG5Q9UPR3 1016 aaKnown RBP16.18■□□□□ 0.18
CLN3-236ENST00000568558 DERAQ9Y315 318 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 ASB3Q9Y575 518 aa16.18■□□□□ 0.18
CLN3-236ENST00000568558 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.18■□□□□ 0.18
CLN3-236ENST00000568558 ANO9A1A5B4 782 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 TISP43B9A030 160 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 CHADO15335 359 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 CYP11A1P05108 521 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 TDGF1P13385 188 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 ACOT2P49753 483 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 MLLT6P55198 1093 aaPredicted RBP16.17■□□□□ 0.18
CLN3-236ENST00000568558 FCHO2Q0JRZ9 810 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 PUM1Q14671 1186 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLN3-236ENST00000568558 TMEM132DQ14C87 1099 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 SF3A1Q15459 793 aaKnown RBP16.17■□□□□ 0.18
CLN3-236ENST00000568558 ZC2HC1CQ53FD0 456 aaPredicted RBP16.17■□□□□ 0.18
CLN3-236ENST00000568558 STXBP5Q5T5C0 1151 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 ARMCX5Q6P1M9 558 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 OR10T2Q8NGX3 314 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 PSMG2Q969U7 264 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 MKNK1Q9BUB5 465 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 ST6GALNAC4Q9H4F1 302 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 ASB7Q9H672 318 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 LMAN1LQ9HAT1 526 aa16.17■□□□□ 0.18
CLN3-236ENST00000568558 HSFX1Q9UBD0 423 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms