RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 PRAMEF33A0A0G2JMD5 474 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 CCDC195A0A1B0GUA6 201 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 FAM227AF5H4B4 570 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 PPM1GO15355 546 aaPredicted RBP4.23□□□□□ -1.73
VPS35-203ENST00000562420 AP1G1O43747 822 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 PRAMEF10O60809 474 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 RHOBTB3O94955 611 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 ALDH2P05091 517 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 GJB1P08034 283 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 ANXA11P50995 505 aaKnown RBP4.23□□□□□ -1.73
VPS35-203ENST00000562420 AGFG1P52594 562 aaKnown RBP4.23□□□□□ -1.73
VPS35-203ENST00000562420 HSD11B2P80365 405 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 KLF10Q13118 480 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 ZNF267Q14586 743 aaPredicted RBP4.23□□□□□ -1.73
VPS35-203ENST00000562420 PLS1Q14651 629 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 PCSK4Q6UW60 755 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 Q6YL49 198 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 CLNKQ7Z7G1 428 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 TPH2Q8IWU9 490 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 RAVER1Q8IY67 606 aaKnown RBP4.23□□□□□ -1.73
VPS35-203ENST00000562420 FTSJ3Q8IY81 847 aaKnown RBP4.23□□□□□ -1.73
VPS35-203ENST00000562420 GRAMD1CQ8IYS0 662 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 KLHDC4Q8TBB5 520 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 NEU4Q8WWR8 484 aaPredicted RBP4.23□□□□□ -1.73
VPS35-203ENST00000562420 LINC00476Q8WZB0 136 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 SLC9A6Q92581 669 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 SLC35A4Q96G79 324 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 CCDC136Q96JN2 1154 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 CGRRF1Q99675 332 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 ZSWIM1Q9BR11 485 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 CNPPD1Q9BV87 410 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 TMEM60Q9H2L4 133 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 TOR3AQ9H497 397 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 ANLNQ9NQW6 1124 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 C1orf112Q9NSG2 853 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 CTTNBP2NLQ9P2B4 639 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 USP25Q9UHP3 1055 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 LAS1LQ9Y4W2 734 aaKnown RBP4.23□□□□□ -1.73
VPS35-203ENST00000562420 NR2E3Q9Y5X4 410 aa4.23□□□□□ -1.73
VPS35-203ENST00000562420 COL4A3Q01955 1670 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 GOLGA6CA6NDK9 693 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 GOLGA6BA6NDN3 693 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 PRSS29PA6NIE9 313 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 FOXN1O15353 648 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 LPXNO60711 386 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 TUSC2O75896 110 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 UBXN7O94888 489 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 GOLGA6DP0CG33 693 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 HKR1P10072 659 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 KRT4P19013 534 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 RAB1AP62820 205 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 GPSM2P81274 684 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 FHL2Q14192 279 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 HLXQ14774 488 aaPredicted RBP4.22□□□□□ -1.73
VPS35-203ENST00000562420 ANO6Q4KMQ2 910 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 ZNF627Q7L945 461 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 PPP1R32Q7Z5V6 425 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 MRGPRGQ86SM5 289 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 CFAP52Q8N1V2 620 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 LNX2Q8N448 690 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 CAMKK1Q8N5S9 505 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 PDPRQ8NCN5 879 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 NACC2Q96BF6 587 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 RNF31Q96EP0 1072 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 ACO2Q99798 780 aaKnown RBP4.22□□□□□ -1.73
VPS35-203ENST00000562420 TLR10Q9BXR5 811 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 UNKLQ9H9P5 680 aaKnown RBP4.22□□□□□ -1.73
VPS35-203ENST00000562420 GOLGA6AQ9NYA3 693 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 MED16Q9Y2X0 877 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 MTO1Q9Y2Z2 717 aaKnown RBP4.22□□□□□ -1.73
VPS35-203ENST00000562420 PAXBP1Q9Y5B6 917 aa4.22□□□□□ -1.73
VPS35-203ENST00000562420 MAST3O60307 1309 aa4.21□□□□□ -1.73
VPS35-203ENST00000562420 WDR33Q9C0J8 1336 aaKnown RBP4.21□□□□□ -1.73
VPS35-203ENST00000562420 CCDC78A2IDD5 438 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 E9PLN8 166 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 PROM1O43490 865 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 FRS3O43559 492 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 HRGP04196 525 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 GNAI2P04899 355 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 SRGNP10124 158 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 FDXRP22570 491 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 HTR1BP28222 390 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 TGFB2P61812 414 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 RPS7P62081 194 aaKnown RBP4.21□□□□□ -1.74
VPS35-203ENST00000562420 TP53BP2Q13625 1128 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 FGL2Q14314 439 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 HABP2Q14520 560 aaPredicted RBP4.21□□□□□ -1.74
VPS35-203ENST00000562420 TAF3Q5VWG9 929 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 PPP1R3BQ86XI6 285 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 MYO1HQ8N1T3 1032 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 POC1BQ8TC44 478 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 ASB10Q8WXI3 467 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 MAP7D2Q96T17 732 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 SMOQ99835 787 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 VKORC1Q9BQB6 163 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 LRFN3Q9BTN0 628 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 C1orf43Q9BWL3 253 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 WDR11Q9BZH6 1224 aa4.21□□□□□ -1.74
VPS35-203ENST00000562420 TINAGL1Q9GZM7 467 aaPredicted RBP4.21□□□□□ -1.74
VPS35-203ENST00000562420 SARS2Q9NP81 518 aaKnown RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms