RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 USP27XA6NNY8 438 aa11□□□□□ -0.65
USP3-219ENST00000561326 DDX3XO00571 662 aaKnown RBP eCLIP11□□□□□ -0.656e-9■■■■□ 22.1
USP3-219ENST00000561326 INPPL1O15357 1258 aa11□□□□□ -0.65
USP3-219ENST00000561326 MED7O43513 233 aa11□□□□□ -0.65
USP3-219ENST00000561326 HUS1O60921 280 aa11□□□□□ -0.65
USP3-219ENST00000561326 RTN2O75298 545 aa11□□□□□ -0.65
USP3-219ENST00000561326 TIMP1P01033 207 aa11□□□□□ -0.65
USP3-219ENST00000561326 H2AFZP0C0S5 128 aa11□□□□□ -0.65
USP3-219ENST00000561326 RAG1P15918 1043 aa11□□□□□ -0.65
USP3-219ENST00000561326 GNA15P30679 374 aa11□□□□□ -0.65
USP3-219ENST00000561326 SCNN1GP51170 649 aa11□□□□□ -0.65
USP3-219ENST00000561326 RNASELQ05823 741 aaKnown RBP11□□□□□ -0.65
USP3-219ENST00000561326 TUSC3Q13454 348 aa11□□□□□ -0.65
USP3-219ENST00000561326 GPNMBQ14956 572 aa11□□□□□ -0.65
USP3-219ENST00000561326 LRRC26Q2I0M4 334 aa11□□□□□ -0.65
USP3-219ENST00000561326 SCARA3Q6AZY7 606 aa11□□□□□ -0.65
USP3-219ENST00000561326 CNKSR3Q6P9H4 555 aa11□□□□□ -0.65
USP3-219ENST00000561326 SCARA5Q6ZMJ2 495 aa11□□□□□ -0.65
USP3-219ENST00000561326 TRIM72Q6ZMU5 477 aa11□□□□□ -0.65
USP3-219ENST00000561326 H2AFVQ71UI9 128 aa11□□□□□ -0.65
USP3-219ENST00000561326 DEFB128Q7Z7B8 93 aa11□□□□□ -0.65
USP3-219ENST00000561326 NOP9Q86U38 636 aaKnown RBP11□□□□□ -0.65
USP3-219ENST00000561326 GLYCTKQ8IVS8 523 aa11□□□□□ -0.65
USP3-219ENST00000561326 TMEM199Q8N511 208 aa11□□□□□ -0.65
USP3-219ENST00000561326 GSTCDQ8NEC7 633 aa11□□□□□ -0.65
USP3-219ENST00000561326 APPL2Q8NEU8 664 aa11□□□□□ -0.65
USP3-219ENST00000561326 SCLYQ96I15 445 aa11□□□□□ -0.65
USP3-219ENST00000561326 SNX25Q9H3E2 840 aa11□□□□□ -0.65
USP3-219ENST00000561326 RNF19AQ9NV58 838 aa11□□□□□ -0.65
USP3-219ENST00000561326 MYO1AQ9UBC5 1043 aa11□□□□□ -0.65
USP3-219ENST00000561326 PUF60Q9UHX1 559 aaKnown RBP11□□□□□ -0.65
USP3-219ENST00000561326 BARX2Q9UMQ3 279 aaPredicted RBP11□□□□□ -0.65
USP3-219ENST00000561326 INPP5FQ9Y2H2 1132 aa11□□□□□ -0.65
USP3-219ENST00000561326 REXO2Q9Y3B8 237 aaKnown RBP11□□□□□ -0.65
USP3-219ENST00000561326 ATP8B3O60423 1300 aa11□□□□□ -0.65
USP3-219ENST00000561326 MEIS3P2A8K0S8 358 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 ZNF263O14978 683 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 KIAA0355O15063 1070 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 PJA2O43164 708 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 THAP12O43422 761 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 EFCAB14O75071 495 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 POMCP01189 267 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 TNNT1P13805 278 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 CDH8P55286 799 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 LILRA4P59901 499 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 ETF1P62495 437 aaKnown RBP10.99□□□□□ -0.65
USP3-219ENST00000561326 SOX4Q06945 474 aaPredicted RBP10.99□□□□□ -0.65
USP3-219ENST00000561326 IFI16Q16666 785 aaKnown RBP10.99□□□□□ -0.65
USP3-219ENST00000561326 NOMO2Q5JPE7 1267 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 TAF3Q5VWG9 929 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 DCLRE1AQ6PJP8 1040 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 UNC93AQ86WB7 457 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 RNF10Q8N5U6 811 aaKnown RBP10.99□□□□□ -0.65
USP3-219ENST00000561326 TOP6BLQ8N6T0 577 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 UBR7Q8N806 425 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 SLC20A1Q8WUM9 679 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 ZNF606Q8WXB4 792 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 TMEM176AQ96HP8 235 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 C16orf45Q96MC5 204 aaPredicted RBP10.99□□□□□ -0.65
USP3-219ENST00000561326 SYT11Q9BT88 431 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 NT5C1AQ9BXI3 368 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 WNT8AQ9H1J5 351 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 PRDM5Q9NQX1 630 aaPredicted RBP10.99□□□□□ -0.65
USP3-219ENST00000561326 MIOSQ9NXC5 875 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 PRKAG2Q9UGJ0 569 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 NOCTQ9UK39 431 aaKnown RBP10.99□□□□□ -0.65
USP3-219ENST00000561326 GUCA1BQ9UMX6 200 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 CEP83Q9Y592 693 aa10.99□□□□□ -0.65
USP3-219ENST00000561326 ABHD14A-ACY1A0A1B0GW23 586 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 PODXLO00592 558 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 CYB561D2O14569 222 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 CILPO75339 1184 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 TACC1O75410 805 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 KIF4AO95239 1232 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 FTLP02792 175 aaPredicted RBP10.98□□□□□ -0.65
USP3-219ENST00000561326 PFKMP08237 780 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 MMEP08473 750 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 VDRP11473 427 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 CD19P15391 556 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 CHRNB2P17787 502 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 GNL1P36915 607 aaPredicted RBP10.98□□□□□ -0.65
USP3-219ENST00000561326 ZNF132P52740 706 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 NAP1L1P55209 391 aaKnown RBP10.98□□□□□ -0.65
USP3-219ENST00000561326 GNG11P61952 73 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 INCA1Q0VD86 236 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 STILQ15468 1287 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 UPP1Q16831 310 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 ZNF394Q53GI3 561 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 DSTYKQ6XUX3 929 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 NYAP1Q6ZVC0 841 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 METTL23Q86XA0 190 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 NPAS4Q8IUM7 802 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 TMEM86AQ8N2M4 240 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 OR6B3Q8NGW1 331 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 KIF18AQ8NI77 898 aa10.98□□□□□ -0.65
USP3-219ENST00000561326 LNX1Q8TBB1 728 aaPredicted RBP10.98□□□□□ -0.65
USP3-219ENST00000561326 CTNNBL1Q8WYA6 563 aaPredicted RBP10.98□□□□□ -0.65
USP3-219ENST00000561326 DDX1Q92499 740 aaKnown RBP10.98□□□□□ -0.65
USP3-219ENST00000561326 CALR3Q96L12 384 aaKnown RBP10.98□□□□□ -0.65
USP3-219ENST00000561326 HEXIM2Q96MH2 286 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms