RNA–Protein interactions for RNA: ENST00000560297.5

USP8-209, Transcript of ubiquitin specific peptidase 8, human

TSL 5

Gene USP8, Length 652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP8-209	ENST00000560297	LMCD1	Q9NZU5	365 aa		13.16	□□□□□ -0.3
USP8-209	ENST00000560297	NXF1	Q9UBU9	619 aa	Known RBP	13.16	□□□□□ -0.3
USP8-209	ENST00000560297	RALGAPA2	Q2PPJ7	1873 aa		13.16	□□□□□ -0.3
USP8-209	ENST00000560297	TRIP11	Q15643	1979 aa		13.16	□□□□□ -0.3
USP8-209	ENST00000560297	TDRD15	B5MCY1	1934 aa	Known RBP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297		I3L4J1	428 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	LPXN	O60711	386 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	TACC1	O75410	805 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	OAZ2	O95190	189 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	UROD	P06132	367 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	TKT	P29401	623 aa	Known RBP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297	LHX1	P48742	406 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	GLUD2	P49448	558 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	UBASH3A	P57075	661 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	FANCC	Q00597	558 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	CREM	Q03060	361 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	UBXN1	Q04323	297 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	YWHAH	Q04917	246 aa	Predicted RBP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297	MRPL58	Q14197	206 aa	Known RBP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297	SMC1A	Q14683	1233 aa	Known RBP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297	SOWAHA	Q2M3V2	549 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	KIAA0319	Q5VV43	1072 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	GAS2L3	Q86XJ1	694 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	THEM5	Q8N1Q8	247 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	TTC39C	Q8N584	583 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	MRPL43	Q8N983	215 aa	Known RBP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297	PIK3R5	Q8WYR1	880 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	MRPL38	Q96DV4	380 aa	Known RBP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297	FAM81B	Q96LP2	452 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	NT5C1B	Q96P26	610 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	TCF25	Q9BQ70	676 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	CRACR2A	Q9BSW2	395 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	NIF3L1	Q9GZT8	377 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	INTS2	Q9H0H0	1204 aa	Known RBP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297	ZBP1	Q9H171	429 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	RBSN	Q9H1K0	784 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	CYP3A43	Q9HB55	503 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	RTN4	Q9NQC3	1192 aa	Known RBP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
USP8-209	ENST00000560297	GCNT4	Q9P109	453 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297	IRAK3	Q9Y616	596 aa		13.15	□□□□□ -0.3
USP8-209	ENST00000560297		A0A1B0GTH6	734 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	EPOP	A6NHQ4	379 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	FSCN2	O14926	492 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	LILRB3	O75022	631 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	TPM3	P06753	285 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	TBXAS1	P24557	533 aa	Predicted RBP	13.14	□□□□□ -0.31
USP8-209	ENST00000560297	DNAJB1	P25685	340 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	PON1	P27169	355 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	ERVFC1	P60507	584 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	CAMK1	Q14012	370 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	GRIN2C	Q14957	1233 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	NR1I3	Q14994	352 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	UVSSA	Q2YD98	709 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	WSCD1	Q658N2	575 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	SMYD5	Q6GMV2	418 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	OVOS1	Q6IE37	1185 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	PDCL2	Q8N4E4	241 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	RIN2	Q8WYP3	895 aa	Predicted RBP	13.14	□□□□□ -0.31
USP8-209	ENST00000560297	DNAI2	Q9GZS0	605 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	PRDM12	Q9H4Q4	367 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	APOBEC3G	Q9HC16	384 aa	Known RBP	13.14	□□□□□ -0.31
USP8-209	ENST00000560297	ENTPD7	Q9NQZ7	604 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	FNIP2	Q9P278	1114 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.14	□□□□□ -0.31
USP8-209	ENST00000560297	BACE2	Q9Y5Z0	518 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	ANK1	P16157	1881 aa		13.14	□□□□□ -0.31
USP8-209	ENST00000560297	LAMA2	P24043	3122 aa	Known RBP	13.14	□□□□□ -0.31
USP8-209	ENST00000560297	RFXAP	O00287	272 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	GABRD	O14764	452 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	CBFA2T2	O43439	604 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	LRRN2	O75325	713 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	SLC9A1	P19634	815 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	POU3F3	P20264	500 aa	Predicted RBP	13.13	□□□□□ -0.31
USP8-209	ENST00000560297	WARS	P23381	471 aa	Known RBP	13.13	□□□□□ -0.31
USP8-209	ENST00000560297	GNL1	P36915	607 aa	Predicted RBP	13.13	□□□□□ -0.31
USP8-209	ENST00000560297	YWHAE	P62258	255 aa	Known RBP	13.13	□□□□□ -0.31
USP8-209	ENST00000560297	GCNT1	Q02742	428 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	RTP2	Q5QGT7	225 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	VARS2	Q5ST30	1063 aa	Known RBP	13.13	□□□□□ -0.31
USP8-209	ENST00000560297	SPOPL	Q6IQ16	392 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	TRIM65	Q6PJ69	517 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	ENOSF1	Q7L5Y1	443 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	ADGRF2	Q8IZF7	708 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	LNX1	Q8TBB1	728 aa	Predicted RBP	13.13	□□□□□ -0.31
USP8-209	ENST00000560297	GDPD5	Q8WTR4	605 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	TATDN2	Q93075	761 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	PPP2R3C	Q969Q6	453 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	JAKMIP2	Q96AA8	810 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.13	□□□□□ -0.31
USP8-209	ENST00000560297	ERGIC2	Q96RQ1	377 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	EMILIN2	Q9BXX0	1053 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	BCO2	Q9BYV7	579 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	SNX25	Q9H3E2	840 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	RXFP1	Q9HBX9	757 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	PLCB1	Q9NQ66	1216 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
USP8-209	ENST00000560297	L1RE1	Q9UN81	338 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	POLI	Q9UNA4	740 aa		13.13	□□□□□ -0.31
USP8-209	ENST00000560297	DAAM1	Q9Y4D1	1078 aa		13.13	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms