RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 EZH2Q15910 746 aaKnown RBP6.1□□□□□ -1.43
VPS13C-208ENST00000559119 PPP4R3AQ6IN85 833 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 TAPT1Q6NXT6 567 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 GIMAP6Q6P9H5 292 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 RASAL3Q86YV0 1011 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 CNTD1Q8N815 330 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 JADE3Q92613 823 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 DPF1Q92782 380 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 USP35Q9P2H5 1018 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 ZNF70Q9UC06 446 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-208ENST00000559119 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.1□□□□□ -1.43
VPS13C-208ENST00000559119 TUBD1Q9UJT1 453 aa6.1□□□□□ -1.43
VPS13C-208ENST00000559119 PHLDB1Q86UU1 1377 aa6.09□□□□□ -1.43
VPS13C-208ENST00000559119 URI1O94763 535 aaPredicted RBP6.09□□□□□ -1.43
VPS13C-208ENST00000559119 ANXA1P04083 346 aa6.09□□□□□ -1.43
VPS13C-208ENST00000559119 ITPKBP27987 946 aa6.09□□□□□ -1.43
VPS13C-208ENST00000559119 LRIG1Q96JA1 1093 aa6.09□□□□□ -1.43
VPS13C-208ENST00000559119 CLPTM1LQ96KA5 538 aa6.09□□□□□ -1.43
VPS13C-208ENST00000559119 TRIB1Q96RU8 372 aa6.09□□□□□ -1.43
VPS13C-208ENST00000559119 CALCOCO1Q9P1Z2 691 aa6.09□□□□□ -1.43
VPS13C-208ENST00000559119 MCM8Q9UJA3 840 aa6.09□□□□□ -1.43
VPS13C-208ENST00000559119 PADI4Q9UM07 663 aa6.09□□□□□ -1.43
VPS13C-208ENST00000559119 AOX1Q06278 1338 aa6.08□□□□□ -1.44
VPS13C-208ENST00000559119 KRTAP29-1A8MX34 341 aaPredicted RBP6.08□□□□□ -1.44
VPS13C-208ENST00000559119 F5H697 171 aa6.08□□□□□ -1.44
VPS13C-208ENST00000559119 RPLP2P05387 115 aaKnown RBP6.08□□□□□ -1.44
VPS13C-208ENST00000559119 HNRNPMP52272 730 aaKnown RBP eCLIP6.08□□□□□ -1.44
VPS13C-208ENST00000559119 TLE1Q04724 770 aa6.08□□□□□ -1.44
VPS13C-208ENST00000559119 IL10RAQ13651 578 aa6.08□□□□□ -1.44
VPS13C-208ENST00000559119 SUMO4Q6EEV6 95 aa6.08□□□□□ -1.44
VPS13C-208ENST00000559119 PBKQ96KB5 322 aa6.08□□□□□ -1.44
VPS13C-208ENST00000559119 PUS7LQ9H0K6 701 aaKnown RBP6.08□□□□□ -1.44
VPS13C-208ENST00000559119 MAN1C1Q9NR34 630 aa6.08□□□□□ -1.44
VPS13C-208ENST00000559119 SLC5A4Q9NY91 659 aa6.08□□□□□ -1.44
VPS13C-208ENST00000559119 ADAM21Q9UKJ8 722 aa6.08□□□□□ -1.44
VPS13C-208ENST00000559119 ADGRA2Q96PE1 1338 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 A0A0B4J269 797 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 WDR27A2RRH5 827 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 VWC2LB2RUY7 222 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 POLRMTO00411 1230 aaKnown RBP6.07□□□□□ -1.44
VPS13C-208ENST00000559119 HTRA2O43464 458 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-208ENST00000559119 TRIAP1O43715 76 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 C5AR1P21730 350 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 IARSP41252 1262 aaKnown RBP6.07□□□□□ -1.44
VPS13C-208ENST00000559119 SLC10A2Q12908 348 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-208ENST00000559119 TUBB3Q13509 450 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 LLGL1Q15334 1064 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 SLC30A10Q6XR72 485 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 BHLHA9Q7RTU4 235 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 TMPRSS9Q7Z410 1059 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 FAM9AQ8IZU1 332 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-208ENST00000559119 CAMKK1Q8N5S9 505 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 C1orf162Q8NEQ5 155 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-208ENST00000559119 FBXO41Q8TF61 875 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 MRGPRX4Q96LA9 322 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 ALG8Q9BVK2 526 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 FAM126AQ9BYI3 521 aaPredicted RBP6.07□□□□□ -1.44
VPS13C-208ENST00000559119 TPSD1Q9BZJ3 242 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 LIMCH1Q9UPQ0 1083 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 PRKAB1Q9Y478 270 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 IPPQ9Y573 584 aa6.07□□□□□ -1.44
VPS13C-208ENST00000559119 KLHL33A6NCF5 533 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 CCDC154A6NI56 674 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 XPOTO43592 962 aaKnown RBP6.06□□□□□ -1.44
VPS13C-208ENST00000559119 MT-CO1P00395 513 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 NR2F6P10588 404 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 GRM1Q13255 1194 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 C3orf36Q3SXR2 165 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 POC1BQ8TC44 478 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 KAT5Q92993 513 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 TMX1Q9H3N1 280 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 FLRT1Q9NZU1 646 aa6.06□□□□□ -1.44
VPS13C-208ENST00000559119 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.06□□□□□ -1.44
VPS13C-208ENST00000559119 SPATA31A3Q5VYP0 1347 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 LINC01548A6NM66 108 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 PROB1E7EW31 1015 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 RHOP08100 348 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 GNAI3P08754 354 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 NDUFV1P49821 464 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 CCT8P50990 548 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 GNAI1P63096 354 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 KIF23Q02241 960 aaPredicted RBP6.05□□□□□ -1.44
VPS13C-208ENST00000559119 INAVAQ3KP66 663 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 PLAC9Q5JTB6 97 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 ZNF425Q6IV72 752 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 PDSS2Q86YH6 399 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 VGLL2Q8N8G2 317 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 SEMA6DQ8NFY4 1073 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 SCAMP4Q969E2 229 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 FAXDC2Q96IV6 333 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 BRD9Q9H8M2 597 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 EHD3Q9NZN3 535 aa6.05□□□□□ -1.44
VPS13C-208ENST00000559119 E9PLN8 166 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 EBLN1P0CF75 366 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 POU3F3P20264 500 aaPredicted RBP6.04□□□□□ -1.44
VPS13C-208ENST00000559119 TMEM119Q4V9L6 283 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 CCDC93Q567U6 631 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 NECAB2Q7Z6G3 386 aa6.04□□□□□ -1.44
VPS13C-208ENST00000559119 CBARPQ8N350 705 aaPredicted RBP6.04□□□□□ -1.44
VPS13C-208ENST00000559119 ZNF366Q8N895 744 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms