RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 ING5Q8WYH8 240 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 SMARCD2Q92925 531 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 IRF7Q92985 503 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 DNAJC19Q96DA6 116 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 ZNF560Q96MR9 790 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 USP28Q96RU2 1077 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 KXD1Q9BQD3 176 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 DDX23Q9BUQ8 820 aaKnown RBP11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 TRPV4Q9HBA0 871 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 TRPV5Q9NQA5 729 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 PANK4Q9NVE7 773 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 FAM86C1Q9NVL1 165 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 DPP3Q9NY33 737 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 ZMYM5Q9UJ78 669 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 TIMM13Q9Y5L4 95 aaPredicted RBP11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 C2orf16Q68DN1 1984 aa11.77□□□□□ -0.53
VTI1BP3-201ENST00000550220 FRMD3A2A2Y4 597 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 MAN2B1O00754 1011 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 CYB561D2O14569 222 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 SPTLC2O15270 562 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 HSP90AA1P07900 732 aaKnown RBP11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 NFICP08651 508 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 CEBPBP17676 345 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 PSMC3P17980 439 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 DUSP4Q13115 394 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 SV2CQ496J9 727 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 FAM78AQ5JUQ0 283 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 ATL3Q6DD88 541 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 FAM173BQ6P4H8 233 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 C1orf228Q6PIY5 440 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 ZNF852Q6ZMS4 543 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 C1orf210Q8IVY1 113 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 IQUBQ8NA54 791 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 DEPDC1BQ8WUY9 529 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 ASB16Q96NS5 453 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 TRMT61BQ9BVS5 477 aaKnown RBP11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 TNMDQ9H2S6 317 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 CEP72Q9P209 647 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 R3HCC1Q9Y3T6 440 aaKnown RBP11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 YIPF1Q9Y548 306 aa11.76□□□□□ -0.53
VTI1BP3-201ENST00000550220 DOCK8Q8NF50 2099 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 WDFY4Q6ZS81 3184 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 FAM170BA6NMN3 283 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 KPNA7A9QM74 516 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 CUTAO60888 179 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 YEATS4O95619 227 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 MYL4P12829 197 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 GLULP15104 373 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 ADSSP30520 456 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 GUCY2FP51841 1108 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 MLLT6P55198 1093 aaPredicted RBP11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 VEPH1Q14D04 833 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 SURF1Q15526 300 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 TANGO2Q6ICL3 276 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 CRELD2Q6UXH1 353 aaPredicted RBP11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 HSCBQ8IWL3 235 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 DCP1BQ8IZD4 617 aaKnown RBP11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 SPATA18Q8TC71 538 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 PSMG2Q969U7 264 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 PGLYRP2Q96PD5 576 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 PYM1Q9BRP8 204 aaKnown RBP11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 FAM213AQ9BRX8 229 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 PANK2Q9BZ23 570 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 ZCWPW1Q9H0M4 648 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 BRD9Q9H8M2 597 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 MAGEF1Q9HAY2 307 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 TBC1D7Q9P0N9 293 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 DLGAP2Q9P1A6 1054 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 VWA8A3KMH1 1905 aa11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 ZFHX2Q9C0A1 2572 aaPredicted RBP11.75□□□□□ -0.53
VTI1BP3-201ENST00000550220 KMT2EQ8IZD2 1858 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 CITO14578 2027 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 MTMR11A4FU01 709 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 PPEF2O14830 753 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 SPTLC1O15269 473 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 EXTL3O43909 919 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 DCNP07585 359 aaKnown RBP11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 OR4Q2P0C623 313 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 SNRPFP62306 86 aaKnown RBP11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 TFAMQ00059 246 aaKnown RBP11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 UBXN2BQ14CS0 331 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 TAF12Q16514 161 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 ZNF528Q3MIS6 628 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 ARHGAP15Q53QZ3 475 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 CNNM4Q6P4Q7 775 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 FRMD5Q7Z6J6 570 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 DNAJB7Q7Z6W7 309 aaPredicted RBP11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 MFSD6LQ8IWD5 586 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 BRSK2Q8IWQ3 736 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 YAF2Q8IY57 180 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 TMEM86AQ8N2M4 240 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 LRRC52Q8N7C0 313 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 PDILTQ8N807 584 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 ST13P5Q8NFI4 369 aaPredicted RBP11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 SPPL2BQ8TCT7 592 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 KCNG4Q8TDN1 519 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 TCEAL4Q96EI5 215 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 MSANTD3Q96H12 275 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 GCNAQ96QF7 691 aa11.74□□□□□ -0.53
VTI1BP3-201ENST00000550220 IER2Q9BTL4 223 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms