RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 BMT2Q1RMZ1 405 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 DCAF4L1Q3SXM0 396 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 ZNF568Q3ZCX4 644 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 C9orf50Q5SZB4 431 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 CCDC183Q5T5S1 534 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 L1TD1Q5T7N2 865 aaKnown RBP6.92□□□□□ -1.3
PRKDC-211ENST00000546304 NT5DC1Q5TFE4 455 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 ATF7IP2Q5U623 682 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 SLC27A1Q6PCB7 646 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 ADAMTSL4Q6UY14 1074 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 ZPBP2Q6X784 338 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 C16orf59Q7L2K0 433 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 EPM2AIP1Q7L775 607 aaPredicted RBP6.92□□□□□ -1.3
PRKDC-211ENST00000546304 ZNF720Q7Z2F6 126 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 GLYCTKQ8IVS8 523 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 MYOCDQ8IZQ8 938 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 TMEM130Q8N3G9 435 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 SCFD1Q8WVM8 642 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 WFDC12Q8WWY7 111 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 HERVK_113Q902F9 699 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 CPB2Q96IY4 423 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 SLC9A7Q96T83 725 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 POP1Q99575 1024 aaKnown RBP6.92□□□□□ -1.3
PRKDC-211ENST00000546304 ADAM2Q99965 735 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 ADPGKQ9BRR6 497 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 TARS2Q9BW92 718 aaKnown RBP6.92□□□□□ -1.3
PRKDC-211ENST00000546304 STRA6Q9BX79 667 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 TRIM6Q9C030 488 aaPredicted RBP6.92□□□□□ -1.3
PRKDC-211ENST00000546304 LACRTQ9GZZ8 138 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 MRPL18Q9H0U6 180 aaKnown RBP6.92□□□□□ -1.3
PRKDC-211ENST00000546304 SLC39A2Q9NP94 309 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 CHST12Q9NRB3 414 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 C1orf112Q9NSG2 853 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 GDAQ9Y2T3 454 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 PCDHA5Q9Y5H7 936 aa6.92□□□□□ -1.3
PRKDC-211ENST00000546304 COL4A4P53420 1690 aaPredicted RBP6.92□□□□□ -1.3
PRKDC-211ENST00000546304 A0A1B0GUA9 196 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 TISP43B9A030 160 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 C9IYK1 514 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 ABLIM1O14639 778 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 TM4SF5O14894 197 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 TOM1L1O75674 476 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 PRPF6O94906 941 aaKnown RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 NPTXRO95502 500 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 FGBP02675 491 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 AMHP03971 560 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 H2AFB1P0C5Y9 115 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 H2AFB2P0C5Z0 115 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 HARSP12081 509 aaKnown RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 ZSCAN20P17040 1043 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 ATF7P17544 494 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 IBSPP21815 317 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 PROZP22891 400 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 BMP8BP34820 402 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 SARSP49591 514 aaKnown RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 KCNA1Q09470 495 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 STK4Q13043 487 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 PSMD2Q13200 908 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 KLHL40Q2TBA0 621 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 UBXN11Q5T124 520 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 ZNF658Q5TYW1 1059 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 RASIP1Q5U651 963 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 EEF1DP3Q658K8 133 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 SLC39A4Q6P5W5 647 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 MPZL3Q6UWV2 235 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.91□□□□□ -1.37e-8■□□□□ 8.4
PRKDC-211ENST00000546304 SLC24A5Q71RS6 500 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 APBB1IPQ7Z5R6 666 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 CDR2LQ86X02 465 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 NPAS4Q8IUM7 802 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 NELFCDQ8IXH7 590 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 SMYD4Q8IYR2 804 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 TDHQ8IZJ6 230 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 SYAP1Q96A49 352 aaPredicted RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 ACCSQ96QU6 501 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 ACO2Q99798 780 aaKnown RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 TRAIPQ9BWF2 469 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 EIF2AQ9BY44 585 aaKnown RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 GTPBP4Q9BZE4 634 aaKnown RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 CDT1Q9H211 546 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 PRO3102Q9H379 93 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 NXF3Q9H4D5 531 aaKnown RBP6.91□□□□□ -1.3
PRKDC-211ENST00000546304 TMEM206Q9H813 350 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 RGS18Q9NS28 235 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 FAM105AQ9NUU6 356 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 MAN1B1Q9UKM7 699 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 EXOC7Q9UPT5 735 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 TNFSF13BQ9Y275 285 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 SLC4A7Q9Y6M7 1214 aa6.91□□□□□ -1.3
PRKDC-211ENST00000546304 A0A0U1RQF3 1178 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 LINC01387J3KSC0 135 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 PDE2AO00408 941 aaPredicted RBP6.9□□□□□ -1.3
PRKDC-211ENST00000546304 BIN1O00499 593 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 EREGO14944 169 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 DYRK3O43781 588 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 KIF20AO95235 890 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 MCF2P10911 925 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 EDN3P14138 238 aa6.9□□□□□ -1.3
PRKDC-211ENST00000546304 ATP2A2P16615 1042 aaKnown RBP6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms