RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 OSBPL6Q9BZF3 934 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 CRISPLD1Q9H336 500 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 SEMA4AQ9H3S1 761 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 HEBP1Q9NRV9 189 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 ODF2LQ9ULJ1 636 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 TBX20Q9UMR3 447 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 UBQLN1Q9UMX0 589 aaKnown RBP9.21□□□□□ -0.94
USP28-215ENST00000545608 SMC3Q9UQE7 1217 aa9.21□□□□□ -0.94
USP28-215ENST00000545608 H0YCG3 227 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 OGTO15294 1046 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 SLC26A4O43511 780 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 MICAL2O94851 1124 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 FAM13AO94988 1023 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 OAZ2O95190 189 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 PIGRP01833 764 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 ADRB2P07550 413 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 MYL4P12829 197 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 PDIA4P13667 645 aaKnown RBP9.2□□□□□ -0.94
USP28-215ENST00000545608 CPB1P15086 417 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 CYP3A5P20815 502 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 LIG4P49917 911 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 ZNF131P52739 623 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 EPHA5P54756 1037 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 YWHAHQ04917 246 aaPredicted RBP9.2□□□□□ -0.94
USP28-215ENST00000545608 PPP2R3AQ06190 1150 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 FZD5Q13467 585 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 KARSQ15046 597 aaKnown RBP9.2□□□□□ -0.94
USP28-215ENST00000545608 CYP4A22Q5TCH4 519 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 IQCEQ6IPM2 695 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 SLC39A4Q6P5W5 647 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 DSTYKQ6XUX3 929 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 BEST2Q8NFU1 509 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 RAD54LQ92698 747 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 CLDN23Q96B33 292 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 CALML4Q96GE6 196 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 ASB16Q96NS5 453 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 PGLYRP2Q96PD5 576 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 FIZ1Q96SL8 496 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 LRRC3Q9BY71 257 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 RPF1Q9H9Y2 349 aaKnown RBP9.2□□□□□ -0.94
USP28-215ENST00000545608 PARVGQ9HBI0 331 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 ZFP14Q9HCL3 533 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 SPATA6Q9NWH7 488 aaPredicted RBP9.2□□□□□ -0.94
USP28-215ENST00000545608 MAFFQ9ULX9 164 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 CACNA1IQ9P0X4 2223 aa9.2□□□□□ -0.94
USP28-215ENST00000545608 EP300Q09472 2414 aaPredicted RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 GVINP1Q7Z2Y8 2422 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 A0A0B4J269 797 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 ANKRD63C9JTQ0 380 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 K7ENM7 598 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 HNRNPDLO14979 420 aaKnown RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 LAMTOR5O43504 91 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 PLCG1P19174 1290 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 NMT1P30419 496 aaKnown RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 LONP1P36776 959 aaKnown RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 VIPR2P41587 438 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 ABL2P42684 1182 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 ID4P47928 161 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 GTF2BQ00403 316 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 CSTF1Q05048 431 aaKnown RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 DUSP4Q13115 394 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 SF3A1Q15459 793 aaKnown RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 TEAD2Q15562 447 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 KYAT1Q16773 422 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 SPATA1Q5VX52 437 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 JADE1Q6IE81 842 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 VITQ6UXI7 678 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 ZNF852Q6ZMS4 543 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 USP37Q86T82 979 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 ZNF687Q8N1G0 1237 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 ELMOD1Q8N336 334 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 DCLK2Q8N568 766 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 SUMF1Q8NBK3 374 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 DNASE1L2Q92874 299 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 SMARCD2Q92925 531 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 TMEM209Q96SK2 561 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 NELL2Q99435 816 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 TRMT61BQ9BVS5 477 aaKnown RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 DNAJC25Q9H1X3 360 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 IKZF4Q9H2S9 585 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 ZHX3Q9H4I2 956 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 BRD9Q9H8M2 597 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 ZNF334Q9HCZ1 680 aaPredicted RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 PLSCR2Q9NRY7 297 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 CPSF3Q9UKF6 684 aaKnown RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 SLC27A5Q9Y2P5 690 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 YIPF1Q9Y548 306 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.19□□□□□ -0.94
USP28-215ENST00000545608 NCANO14594 1321 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 MYH15Q9Y2K3 1946 aa9.19□□□□□ -0.94
USP28-215ENST00000545608 OR6C75A6NL08 312 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 TISP43B9A030 160 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 PIRO00625 290 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 XPOTO43592 962 aaKnown RBP9.18□□□□□ -0.94
USP28-215ENST00000545608 BMP15O95972 392 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 KRT18P05783 430 aaKnown RBP9.18□□□□□ -0.94
USP28-215ENST00000545608 NFICP08651 508 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 PSMC3P17980 439 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 TYMPP19971 482 aa9.18□□□□□ -0.94
USP28-215ENST00000545608 GDI1P31150 447 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms