RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PKD1L3Q7Z443 1732 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 ZNF185O15231 689 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 ADCY6O43306 1168 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 CA12O43570 354 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 SNRPA1P09661 255 aaKnown RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 CPEP16870 476 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 IBSPP21815 317 aaPredicted RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 ECHS1P30084 290 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 ADSLP30566 484 aaPredicted RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 AVPR1BP47901 424 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 CLRN1P58418 232 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 CCT2P78371 535 aaKnown RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 GUCY1B3Q02153 619 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 ADRM1Q16186 407 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 MUM1Q2TAK8 710 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 DEFB115Q30KQ5 88 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 PDCD4Q53EL6 469 aaKnown RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 CT47A1Q5JQC4 288 aaPredicted RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 ATXN7L2Q5T6C5 722 aaPredicted RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 FAM102AQ5T9C2 384 aaPredicted RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 ARMC6Q6NXE6 501 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 Q6YL49 198 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 ZNF572Q7Z3I7 529 aaPredicted RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 TRMT2AQ8IZ69 625 aaKnown RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 LCORLQ8N3X6 602 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 BEND2Q8NDZ0 799 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 CPEB3Q8NE35 698 aaKnown RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 TSPEARQ8WU66 669 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 LMBR1Q8WVP7 490 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 WDR11Q9BZH6 1224 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 QRSL1Q9H0R6 528 aaKnown RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 BCO1Q9HAY6 547 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 IFT122Q9HBG6 1241 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 RNF181Q9P0P0 153 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 USP15Q9Y4E8 981 aaPredicted RBP5.12□□□□□ -1.59
CD44-235ENST00000532339 GPRASP1Q5JY77 1395 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 SPATA31E1Q6ZUB1 1445 aa5.12□□□□□ -1.59
CD44-235ENST00000532339 TRPM3Q9HCF6 1732 aaPredicted RBP5.11□□□□□ -1.59
CD44-235ENST00000532339 GLTPD2A6NH11 291 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 CXorf49A8MYA2 514 aaPredicted RBP5.11□□□□□ -1.59
CD44-235ENST00000532339 NUDT3O95989 172 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 DDX6P26196 483 aaKnown RBP eCLIP5.11□□□□□ -1.59
CD44-235ENST00000532339 ANAPC15P60006 121 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 SP140Q13342 867 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 ANO4Q32M45 955 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 RRP12Q5JTH9 1297 aaKnown RBP5.11□□□□□ -1.59
CD44-235ENST00000532339 AFAP1L2Q8N4X5 818 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 REPS2Q8NFH8 660 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 SLC35B2Q8TB61 432 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 TGFBRAP1Q8WUH2 860 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 UHRF1Q96T88 793 aaPredicted RBP5.11□□□□□ -1.59
CD44-235ENST00000532339 TEX101Q9BY14 249 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 ACE2Q9BYF1 805 aaPredicted RBP5.11□□□□□ -1.59
CD44-235ENST00000532339 GREM2Q9H772 168 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 ZNHIT2Q9UHR6 403 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 ZBTB21Q9ULJ3 1066 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 ATP11BQ9Y2G3 1177 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 FPGT-TNNI3KV9GXZ4 949 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 PASKQ96RG2 1323 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 TRPM1Q7Z4N2 1603 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 NHSQ6T4R5 1651 aa5.11□□□□□ -1.59
CD44-235ENST00000532339 DRGXA6NNA5 263 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 CPDO75976 1380 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 COL5A2P05997 1499 aaPredicted RBP5.1□□□□□ -1.59
CD44-235ENST00000532339 USP6P35125 1406 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 PLA2G5P39877 138 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 CHN2P52757 468 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 CLTCL1P53675 1640 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 SCAND1P57086 179 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 BLOC1S1P78537 153 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 STAT4Q14765 748 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 MUM1L1Q5H9M0 696 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 MYOM3Q5VTT5 1437 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 METRNLQ641Q3 311 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 DPY19L2P1Q6NXN4 242 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 Q6ZVL8 140 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 KRT26Q7Z3Y9 468 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 KCNK18Q7Z418 384 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 CMIPQ8IY22 773 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 DRC7Q8IY82 874 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 COQ10AQ96MF6 247 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 RIOX1Q9H6W3 641 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 RBM12Q9NTZ6 932 aaKnown RBP5.1□□□□□ -1.59
CD44-235ENST00000532339 MOCS1Q9NZB8 636 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 SCOCQ9UIL1 159 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 VCANP13611 3396 aa5.1□□□□□ -1.59
CD44-235ENST00000532339 TUBGCP6Q96RT7 1819 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 AKAP12Q02952 1782 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 LMO7Q8WWI1 1683 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 UNC80Q8N2C7 3258 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 ATRNL1Q5VV63 1379 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 PIPSLA2A3N6 862 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 MARCH11A6NNE9 402 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 HKR1P10072 659 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 IL2RBP14784 551 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 ALOX15P16050 662 aaPredicted RBP5.09□□□□□ -1.59
CD44-235ENST00000532339 POU3F3P20264 500 aaPredicted RBP5.09□□□□□ -1.59
CD44-235ENST00000532339 TGM1P22735 817 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 SREBF1P36956 1147 aa5.09□□□□□ -1.59
CD44-235ENST00000532339 PER3P56645 1201 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms