RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 USP25Q9UHP3 1055 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 HOOK1Q9UJC3 728 aaKnown RBP4.6□□□□□ -1.67
CD44-226ENST00000527889 TUBE1Q9UJT0 475 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 ZNF180Q9UJW8 692 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 MAN1B1Q9UKM7 699 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 TPX2Q9ULW0 747 aaKnown RBP4.6□□□□□ -1.67
CD44-226ENST00000527889 STXBP5LQ9Y2K9 1186 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 DIS3Q9Y2L1 958 aaKnown RBP4.6□□□□□ -1.67
CD44-226ENST00000527889 PCDHA9Q9Y5H5 950 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 FRMPD4Q14CM0 1322 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 MYPNQ86TC9 1320 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 RPTORQ8N122 1335 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 RALGAPA2Q2PPJ7 1873 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 ZNF638Q14966 1978 aaKnown RBP4.6□□□□□ -1.67
CD44-226ENST00000527889 SCN10AQ9Y5Y9 1956 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 MYO9BQ13459 2157 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 CEP290O15078 2479 aa4.6□□□□□ -1.67
CD44-226ENST00000527889 LAMA3Q16787 3333 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CCL15-CCL14A0A0B4J2E2 113 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ZNF891A8MT65 544 aaPredicted RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 K7ESF4 209 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CBX4O00257 560 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 AQP7O14520 342 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ATP2A1O14983 1001 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 AP5Z1O43299 807 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CHMP2AO43633 222 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 GAS7O60861 476 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 RNGTTO60942 597 aaKnown RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 MED24O75448 989 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 PRKD3O94806 890 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 SMC2O95347 1197 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 TIAF1O95411 115 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CPP00450 1065 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CYP2C8P10632 490 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 PYGMP11217 842 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 DRD2P14416 443 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ZSCAN20P17040 1043 aaPredicted RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 BDNFP23560 247 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 HOXA7P31268 230 aaPredicted RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 CCT6AP40227 531 aaKnown RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 ADCYAP1R1P41586 468 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ECI1P42126 302 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 SCNN1BP51168 640 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 OAZ1P54368 228 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 MRPS9P82933 396 aaKnown RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 CACNA1BQ00975 2339 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CNTN2Q02246 1040 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 DSG1Q02413 1049 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 GHRHRQ02643 423 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 SPIRE1Q08AE8 756 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 SNAPC2Q13487 334 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ADGRE1Q14246 886 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 PDIA5Q14554 519 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 PPP2R5DQ14738 602 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 IQCB1Q15051 598 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 PGM5Q15124 567 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ZRSR2Q15696 482 aaKnown RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 CCL15Q16663 113 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 C4orf46Q504U0 113 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CEP55Q53EZ4 464 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 LRCH2Q5VUJ6 765 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ARHGEF16Q5VV41 709 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CST9Q5W186 159 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 KRT79Q5XKE5 535 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ICE2Q659A1 982 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 LBX2Q6XYB7 198 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 DYMQ7RTS9 669 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 KCNK18Q7Z418 384 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 RIOX2Q8IUF8 465 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 DHX40Q8IX18 779 aaKnown RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 SMYD4Q8IYR2 804 aaPredicted RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 CBARPQ8N350 705 aaPredicted RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 AOPEPQ8N6M6 819 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 C2orf69Q8N8R5 385 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 KREMEN2Q8NCW0 462 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 JPH3Q8WXH2 748 aaPredicted RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 SLC5A5Q92911 643 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 LENG1Q96BZ8 264 aaPredicted RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 AK8Q96MA6 479 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 FBXL18Q96ME1 805 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 MXRA8Q9BRK3 442 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 MENTQ9BUN1 341 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ASPNQ9BXN1 380 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 MOV10L1Q9BXT6 1211 aaKnown RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 RAB34Q9BZG1 259 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 WDR11Q9BZH6 1224 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 THSD7BQ9C0I4 1608 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 PRDM14Q9GZV8 571 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 SPATC1LQ9H0A9 340 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 ZNF700Q9H0M5 742 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 PIDD1Q9HB75 910 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CYP4F12Q9HCS2 524 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 A1CFQ9NQ94 594 aaKnown RBP4.59□□□□□ -1.67
CD44-226ENST00000527889 CYP26B1Q9NR63 512 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 PXMP2Q9NR77 195 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 BLOC1S4Q9NUP1 217 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 PRR13Q9NZ81 148 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 SAMD15Q9P1V8 674 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 CCDC39Q9UFE4 941 aa4.59□□□□□ -1.67
CD44-226ENST00000527889 FBXL21Q9UKT6 434 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms