RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CALCAP01258 141 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 SCNN1GP51170 649 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.46■■□□□ 1.19
VPS28-208ENST00000527797 LINC01599Q8WXQ3 324 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 PCDHB18PQ96TA0 734 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 PACSIN1Q9BY11 444 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 IRX2Q9BZI1 471 aaPredicted RBP22.46■■□□□ 1.19
VPS28-208ENST00000527797 SNX9Q9Y5X1 595 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 DUSP10Q9Y6W6 482 aa22.46■■□□□ 1.19
VPS28-208ENST00000527797 TMCO5BA8MYB1 307 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 GZMAP12544 262 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 TAF6P49848 677 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 ZNF394Q53GI3 561 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 ZNF569Q5MCW4 686 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 PALB2Q86YC2 1186 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 KIF18AQ8NI77 898 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 SECISBP2LQ93073 1101 aaKnown RBP22.45■■□□□ 1.18
VPS28-208ENST00000527797 PPP1R12CQ9BZL4 782 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 PDCL3Q9H2J4 239 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 PUF60Q9UHX1 559 aaKnown RBP22.45■■□□□ 1.18
VPS28-208ENST00000527797 DNAI1Q9UI46 699 aa22.45■■□□□ 1.18
VPS28-208ENST00000527797 KPNA7A9QM74 516 aa22.44■■□□□ 1.18
VPS28-208ENST00000527797 THAP12O43422 761 aa22.44■■□□□ 1.18
VPS28-208ENST00000527797 AFF1P51825 1210 aaKnown RBP22.44■■□□□ 1.18
VPS28-208ENST00000527797 CCL23P55773 120 aa22.44■■□□□ 1.18
VPS28-208ENST00000527797 SV2CQ496J9 727 aa22.44■■□□□ 1.18
VPS28-208ENST00000527797 SCLYQ96I15 445 aa22.44■■□□□ 1.18
VPS28-208ENST00000527797 TAS2R14Q9NYV8 317 aa22.44■■□□□ 1.18
VPS28-208ENST00000527797 PAXBP1Q9Y5B6 917 aa22.44■■□□□ 1.18
VPS28-208ENST00000527797 MACROD2A1Z1Q3 448 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 RTN2O75298 545 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 CILPO75339 1184 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 PAEPP09466 180 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 GALCP54803 685 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 NECAB2Q7Z6G3 386 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 WNT8AQ9H1J5 351 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 ISCUQ9H1K1 167 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 TMEM39AQ9NV64 488 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 GDAP2Q9NXN4 497 aa22.43■■□□□ 1.18
VPS28-208ENST00000527797 BARX2Q9UMQ3 279 aaPredicted RBP22.43■■□□□ 1.18
VPS28-208ENST00000527797 BTNL10A8MVZ5 291 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 ENPP3O14638 875 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 INPPL1O15357 1258 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 POMCP01189 267 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 RPL9P32969 192 aaKnown RBP22.42■■□□□ 1.18
VPS28-208ENST00000527797 CYP2C18P33260 490 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 INCA1Q0VD86 236 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 GRIK3Q13003 919 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 TRIM72Q6ZMU5 477 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 DNAAF5Q86Y56 855 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 RNF10Q8N5U6 811 aaKnown RBP22.42■■□□□ 1.18
VPS28-208ENST00000527797 ZNF606Q8WXB4 792 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 TBX21Q9UL17 535 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 INPP5FQ9Y2H2 1132 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 CXCL10P02778 98 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 FTLP02792 175 aaPredicted RBP22.42■■□□□ 1.18
VPS28-208ENST00000527797 CLTBP09497 229 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 TMEM253P0C7T8 217 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 CASQ1P31415 396 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 RAD23BP54727 409 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 LRRC26Q2I0M4 334 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 CLEC16AQ2KHT3 1053 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 GLB1LQ6UWU2 654 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 WHAMMQ8TF30 809 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 TMEM176AQ96HP8 235 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 WDR24Q96S15 920 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 ELAC1Q9H777 363 aaKnown RBP22.42■■□□□ 1.18
VPS28-208ENST00000527797 TMEM161AQ9NX61 479 aa22.42■■□□□ 1.18
VPS28-208ENST00000527797 ANKRD62A6NC57 917 aa22.41■■□□□ 1.18
VPS28-208ENST00000527797 PODXLO00592 558 aa22.41■■□□□ 1.18
VPS28-208ENST00000527797 SPTLC1O15269 473 aa22.41■■□□□ 1.18
VPS28-208ENST00000527797 NAP1L1P55209 391 aaKnown RBP22.41■■□□□ 1.18
VPS28-208ENST00000527797 LILRA4P59901 499 aa22.41■■□□□ 1.18
VPS28-208ENST00000527797 ACAD10Q6JQN1 1059 aa22.41■■□□□ 1.18
VPS28-208ENST00000527797 SLC35F6Q8N357 371 aa22.41■■□□□ 1.18
VPS28-208ENST00000527797 CTNNBL1Q8WYA6 563 aaPredicted RBP22.41■■□□□ 1.18
VPS28-208ENST00000527797 DDX27Q96GQ7 796 aaKnown RBP22.41■■□□□ 1.18
VPS28-208ENST00000527797 ELOVL4Q9GZR5 314 aa22.41■■□□□ 1.18
VPS28-208ENST00000527797 MED7O43513 233 aa22.4■■□□□ 1.18
VPS28-208ENST00000527797 TACC1O75410 805 aa22.4■■□□□ 1.18
VPS28-208ENST00000527797 CYP1A1P04798 512 aaPredicted RBP22.4■■□□□ 1.18
VPS28-208ENST00000527797 CD19P15391 556 aa22.4■■□□□ 1.18
VPS28-208ENST00000527797 BRD2P25440 801 aaKnown RBP22.4■■□□□ 1.18
VPS28-208ENST00000527797 CLCNKBP51801 687 aa22.4■■□□□ 1.18
VPS28-208ENST00000527797 NDST1P52848 882 aa22.4■■□□□ 1.18
VPS28-208ENST00000527797 SOWAHAQ2M3V2 549 aa22.4■■□□□ 1.18
VPS28-208ENST00000527797 SLC4A11Q8NBS3 891 aa22.4■■□□□ 1.18
VPS28-208ENST00000527797 NOX5Q96PH1 765 aa22.4■■□□□ 1.18
VPS28-208ENST00000527797 MRPL45Q9BRJ2 306 aaKnown RBP22.4■■□□□ 1.18
VPS28-208ENST00000527797 TRIP11Q15643 1979 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 HUS1O60921 280 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 MOCS3O95396 460 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 UNGP13051 313 aaPredicted RBP22.39■■□□□ 1.18
VPS28-208ENST00000527797 ABCB4P21439 1286 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 TUSC3Q13454 348 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 APPL2Q8NEU8 664 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 URGCPQ8TCY9 931 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 CYFIP2Q96F07 1278 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 TWNKQ96RR1 684 aa22.39■■□□□ 1.18
VPS28-208ENST00000527797 NT5C1AQ9BXI3 368 aa22.39■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms