RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 UGP2Q16851 508 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 AASDHQ4L235 1098 aaPredicted RBP13.91□□□□□ -0.18
TCOF1-214ENST00000515035 NBPF15Q8N660 670 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 GOLPH3Q9H4A6 298 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 SYBUQ9NX95 663 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 SLC8A2Q9UPR5 921 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 ALG6Q9Y672 507 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 PNPLA6Q8IY17 1366 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 TSPY1Q01534 308 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 LAYNQ6UX15 382 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 HAUS6Q7Z4H7 955 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 GPD1LQ8N335 351 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 FAM118BQ9BPY3 351 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 TRIM54Q9BYV2 358 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 FAM49AQ9H0Q0 323 aaPredicted RBP13.91□□□□□ -0.18
TCOF1-214ENST00000515035 NDFIP2Q9NV92 336 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 A0A1W2PQJ5 194 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 TPST1O60507 370 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 NMT1P30419 496 aaKnown RBP13.91□□□□□ -0.18
TCOF1-214ENST00000515035 HMOX2P30519 316 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 MTM1Q13496 603 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 SF3B3Q15393 1217 aaKnown RBP13.91□□□□□ -0.18
TCOF1-214ENST00000515035 CCDC81Q6ZN84 652 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 AGAP3Q96P47 875 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 RMDN3Q96TC7 470 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 LXNQ9BS40 222 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 FAM32AQ9Y421 112 aaKnown RBP13.91□□□□□ -0.18
TCOF1-214ENST00000515035 PTPRMP28827 1452 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 FAM95CA0A1B0GW59 222 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 TMEM253P0C7T8 217 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 CCDC142Q17RM4 750 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 SLC44A5Q8NCS7 719 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 SENP7Q9BQF6 1050 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 MMTAG2Q9BU76 263 aaKnown RBP13.91□□□□□ -0.18
TCOF1-214ENST00000515035 GPBP1L1Q9HC44 474 aaPredicted RBP13.91□□□□□ -0.18
TCOF1-214ENST00000515035 AFF4Q9UHB7 1163 aaKnown RBP13.91□□□□□ -0.18
TCOF1-214ENST00000515035 FEM1BQ9UK73 627 aa13.91□□□□□ -0.18
TCOF1-214ENST00000515035 NRKQ7Z2Y5 1582 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 FAM205CA6NFA0 338 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 RASSF9O75901 435 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 CYFIP1Q7L576 1253 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 TRAPPC11Q7Z392 1133 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 SCFD1Q8WVM8 642 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 ZNF556Q9HAH1 456 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 MADDQ8WXG6 1647 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 UTYO14607 1347 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 FKBP9O95302 570 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 CLPTM1O96005 669 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 NUDT2P50583 147 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 RAB14P61106 215 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 PPP4R4Q6NUP7 873 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 FKBP9P1Q75LS8 142 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 CPA5Q8WXQ8 436 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 PHF21AQ96BD5 680 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 EIF2AK1Q9BQI3 630 aaKnown RBP13.9□□□□□ -0.18
TCOF1-214ENST00000515035 DCP1AQ9NPI6 582 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-214ENST00000515035 NCOA3Q9Y6Q9 1424 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 ABCA6Q8N139 1617 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 FMO5P49326 533 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 USP49Q70CQ1 688 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 TTC39CQ8N584 583 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 C7orf25Q9BPX7 421 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 SP110Q9HB58 689 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 CNGB3Q9NQW8 809 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 NSMCE4AQ9NXX6 385 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 HERC5Q9UII4 1024 aaKnown RBP13.9□□□□□ -0.18
TCOF1-214ENST00000515035 ATP6V1G2O95670 118 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 PSMC3P17980 439 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 GRIN1Q05586 938 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 PDIA5Q14554 519 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 C18orf8Q96DM3 657 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 FAM167AQ96KS9 214 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 SIK2Q9H0K1 926 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 IL1RL2Q9HB29 575 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 V9GYQ6 96 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 ABCB11O95342 1321 aa13.9□□□□□ -0.18
TCOF1-214ENST00000515035 SPRP35270 261 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 NKX1-1Q15270 411 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 TAS2R42Q7RTR8 314 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 EPS8L3Q8TE67 593 aaKnown RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 FAM217BQ9NTX9 383 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 QRICH2Q9H0J4 1663 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 PDS5AQ29RF7 1337 aaKnown RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 ZNF197O14709 1029 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 UBOX5O94941 541 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 SLC9A1P19634 815 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 TTC39BQ5VTQ0 682 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 LMBRD2Q68DH5 695 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 TMBIM4Q9HC24 238 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 AGO2Q9UKV8 859 aaKnown RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 SPATA31A5Q5VU36 1347 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 SPATA31A7Q8IWB4 1347 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 O00370 1275 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 EYA4O95677 639 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 OCM2P0CE71 109 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 OCMP0CE72 109 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 COILP38432 576 aaPredicted RBP13.89□□□□□ -0.19
TCOF1-214ENST00000515035 KLK7P49862 253 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 LUZP2Q86TE4 346 aa13.89□□□□□ -0.19
TCOF1-214ENST00000515035 HEATR4Q86WZ0 1026 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms