RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 CNGA4Q8IV77 575 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 FMNL3Q8IVF7 1028 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 HERC6Q8IVU3 1022 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 DRC7Q8IY82 874 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 PPM1KQ8N3J5 372 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 TTC39CQ8N584 583 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 TOP6BLQ8N6T0 577 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 SPC24Q8NBT2 197 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 C3orf58Q8NDZ4 430 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 ZNF397Q8NF99 534 aaPredicted RBP7.72□□□□□ -1.17
NUP54-204ENST00000506098 SPATA18Q8TC71 538 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 SHC3Q92529 594 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 PANX2Q96RD6 677 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 DNAJC7Q99615 494 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 RAD9AQ99638 391 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 NIF3L1Q9GZT8 377 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 NLRC4Q9NPP4 1024 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 AIPL1Q9NZN9 384 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 DNAJB4Q9UDY4 337 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 AJAP1Q9UKB5 411 aaPredicted RBP7.72□□□□□ -1.17
NUP54-204ENST00000506098 FAN1Q9Y2M0 1017 aa7.72□□□□□ -1.17
NUP54-204ENST00000506098 LAMA2P24043 3122 aaKnown RBP7.72□□□□□ -1.17
NUP54-204ENST00000506098 C2orf16Q68DN1 1984 aa7.71□□□□□ -1.17
NUP54-204ENST00000506098 GOLGA6L6A8MZA4 724 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 F8VZ95 297 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 FOXN3O00409 490 aaPredicted RBP7.71□□□□□ -1.18
NUP54-204ENST00000506098 MFAP3LO75121 409 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 CYP11A1P05108 521 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 LINC00271P0C7V0 271 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 ATP2A2P16615 1042 aaKnown RBP7.71□□□□□ -1.18
NUP54-204ENST00000506098 ACO1P21399 889 aaKnown RBP7.71□□□□□ -1.18
NUP54-204ENST00000506098 IGFBP6P24592 240 aaPredicted RBP7.71□□□□□ -1.18
NUP54-204ENST00000506098 CLCN1P35523 988 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 KRT9P35527 623 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 OR1G1P47890 313 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 SLC11A1P49279 550 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 BCAR1P56945 870 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 YWHAEP62258 255 aaKnown RBP7.71□□□□□ -1.18
NUP54-204ENST00000506098 TNNC1P63316 161 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 CDK17Q00537 523 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 INCA1Q0VD86 236 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 LRMPQ12912 555 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 DRAP1Q14919 205 aaPredicted RBP7.71□□□□□ -1.18
NUP54-204ENST00000506098 SHHQ15465 462 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 SOWAHAQ2M3V2 549 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 TIGD5Q53EQ6 642 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 C9orf50Q5SZB4 431 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 PDXDC1Q6P996 788 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 RRAGAQ7L523 313 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 IRF2BP2Q7Z5L9 587 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 TMCO2Q7Z6W1 182 aaPredicted RBP7.71□□□□□ -1.18
NUP54-204ENST00000506098 FAM71AQ8IYT1 594 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 TMEM86AQ8N2M4 240 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 OR8K1Q8NGG5 319 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 CPLX3Q8WVH0 158 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 CLP1Q92989 425 aaKnown RBP7.71□□□□□ -1.18
NUP54-204ENST00000506098 KAT5Q92993 513 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 ELMO3Q96BJ8 720 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 SUSD3Q96L08 255 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 SENP8Q96LD8 212 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 COLEC11Q9BWP8 271 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 SDCBP2Q9H190 292 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 ABHD10Q9NUJ1 306 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 CACNG4Q9UBN1 327 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 ADAM28Q9UKQ2 775 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 POLIQ9UNA4 740 aa7.71□□□□□ -1.18
NUP54-204ENST00000506098 HELZP42694 1942 aaKnown RBP7.71□□□□□ -1.18
NUP54-204ENST00000506098 NOTCH4Q99466 2003 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 ARHGEF37A1IGU5 675 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 LRRC53A6NM62 1247 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 CYB561D2O14569 222 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 GABRDO14764 452 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 TRAPPC3O43617 180 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 HUS1O60921 280 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 CILPO75339 1184 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 B3GAT3O94766 335 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 KIF4AO95239 1232 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 ITGB1P05556 798 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 FERP16591 822 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 LAG3P18627 525 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 TYMPP19971 482 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 WARSP23381 471 aaKnown RBP7.7□□□□□ -1.18
NUP54-204ENST00000506098 SOX5P35711 763 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 PRKCIP41743 596 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 STAT1P42224 750 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 ALDH7A1P49419 539 aaKnown RBP7.7□□□□□ -1.18
NUP54-204ENST00000506098 ZNF132P52740 706 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 ADKP55263 362 aaKnown RBP7.7□□□□□ -1.18
NUP54-204ENST00000506098 CDH8P55286 799 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 RAPGEF1Q13905 1077 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 BTG3Q14201 252 aaPredicted RBP7.7□□□□□ -1.18
NUP54-204ENST00000506098 MEA1Q16626 185 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 ARHGAP44Q17R89 818 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 PAN2Q504Q3 1202 aaKnown RBP7.7□□□□□ -1.18
NUP54-204ENST00000506098 SFMBT2Q5VUG0 894 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 FAM117BQ6P1L5 589 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 WDR59Q6PJI9 974 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 KCNT2Q6UVM3 1135 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 CCDC186Q7Z3E2 898 aa7.7□□□□□ -1.18
NUP54-204ENST00000506098 UNC93AQ86WB7 457 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms