RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 EN1Q05925 392 aaPredicted RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 WASHC5Q12768 1159 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 MEI1Q5TIA1 1274 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 C4orf33Q8N1A6 199 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 LINC00116Q8NCU8 138 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 STAMBPL1Q96FJ0 436 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 COG4Q9H9E3 785 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 WARS2Q9UGM6 360 aaKnown RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 TMEM120BA0PK00 339 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 EXTL3O43909 919 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 EFCAB14O75071 495 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 MAP4P27816 1152 aaKnown RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 PTGISQ16647 500 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 CAPRIN2Q6IMN6 1127 aaKnown RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 OLFML3Q9NRN5 406 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 AFF4Q9UHB7 1163 aaKnown RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 GAS2O43903 313 aaKnown RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 ENO1P06733 434 aaKnown RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 ITGA4P13612 1032 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 GLB1LQ6UWU2 654 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 LONP2Q86WA8 852 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 IGSF9BQ9UPX0 1349 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 RASSF10A6NK89 507 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 C6orf222P0C671 652 aaPredicted RBP20.06■□□□□ 0.8
COL27A1-207ENST00000494090 FBXW10Q5XX13 1052 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 PAK5Q9P286 719 aa20.06■□□□□ 0.8
COL27A1-207ENST00000494090 GFAPP14136 432 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 IL10P22301 178 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 KYNUQ16719 465 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 RNF135Q8IUD6 432 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 PNKPQ96T60 521 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 ARHGAP26Q9UNA1 814 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 RPS6KA5O75582 802 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 CETPP11597 493 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 MAP3K10Q02779 954 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 KDSRQ06136 332 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 CALML6Q8TD86 181 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 NT5C1AQ9BXI3 368 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 ERAP1Q9NZ08 941 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 MTSS1O43312 755 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 KRT16P08779 473 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 RARBP10826 455 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 TOB1P50616 345 aaPredicted RBP20.05■□□□□ 0.8
COL27A1-207ENST00000494090 RSAD1Q9HA92 442 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 TFR2Q9UP52 801 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 FRMPD1Q5SYB0 1578 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 FNTAP49354 379 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 PRKCEQ02156 737 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 PLA2G4FQ68DD2 849 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 KAZALD1Q96I82 304 aa20.05■□□□□ 0.8
COL27A1-207ENST00000494090 SLC37A4O43826 429 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 PLEKP08567 350 aaPredicted RBP20.04■□□□□ 0.8
COL27A1-207ENST00000494090 HMOX2P30519 316 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 IL17RAQ96F46 866 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 CLMNQ96JQ2 1002 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 NAGPAQ9UK23 515 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 CLTCQ00610 1675 aaKnown RBP20.04■□□□□ 0.8
COL27A1-207ENST00000494090 HSD17B3P37058 310 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 PNPLA4P41247 253 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 MED21Q13503 144 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 SYTL3Q4VX76 610 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 RABGAP1LQ5R372 815 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 BARGINQ6ZT62 677 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 RFX8Q6ZV50 586 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 ATXN7L3BQ96GX2 97 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 FUT8Q9BYC5 575 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 SLC7A5P2Q9GIP4 190 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 CATSPERBQ9H7T0 1116 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 GTF3C4Q9UKN8 822 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 SALL3Q9BXA9 1300 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 DIP2AQ14689 1571 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 IQGAP1P46940 1657 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 CCT8L1PA6NM43 557 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 CYP11B2P19099 503 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 PTK7Q13308 1070 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 SMAD1Q15797 465 aaKnown RBP20.04■□□□□ 0.8
COL27A1-207ENST00000494090 C17orf75Q9HAS0 396 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 MTO1Q9Y2Z2 717 aaKnown RBP20.04■□□□□ 0.8
COL27A1-207ENST00000494090 SLC30A1Q9Y6M5 507 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 POLRMTO00411 1230 aaKnown RBP20.04■□□□□ 0.8
COL27A1-207ENST00000494090 ATMINO43313 823 aaPredicted RBP20.04■□□□□ 0.8
COL27A1-207ENST00000494090 H2AFXP16104 143 aaPredicted RBP20.04■□□□□ 0.8
COL27A1-207ENST00000494090 ZC3H12BQ5HYM0 836 aaKnown RBP20.04■□□□□ 0.8
COL27A1-207ENST00000494090 KDM7AQ6ZMT4 941 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 PRDM5Q9NQX1 630 aaPredicted RBP20.04■□□□□ 0.8
COL27A1-207ENST00000494090 AGPAT3Q9NRZ7 376 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 SUFUQ9UMX1 484 aa20.04■□□□□ 0.8
COL27A1-207ENST00000494090 SUPT3HO75486 399 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 ATF7IP2Q5U623 682 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 SMIM5Q71RC9 77 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 FEZF2Q8TBJ5 459 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 KBTBD4Q9NVX7 518 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 TRAF3IP3Q9Y228 551 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 PRPF4O43172 522 aaKnown RBP eCLIP20.03■□□□□ 0.82e-7■■■□□ 15
COL27A1-207ENST00000494090 HDAC4P56524 1084 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 PDAP1Q13442 181 aaKnown RBP20.03■□□□□ 0.8
COL27A1-207ENST00000494090 SLC29A2Q14542 456 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 PDK1Q15118 436 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 MTFR1Q15390 333 aa20.03■□□□□ 0.8
COL27A1-207ENST00000494090 PAPD7Q5XG87 772 aaKnown RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms