RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	HDAC7	Q8WUI4	952 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	SCFD1	Q8WVM8	642 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	PIK3R5	Q8WYR1	880 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	BORCS6	Q96GS4	357 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	UROC1	Q96N76	676 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	ACAP3	Q96P50	834 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	MED15	Q96RN5	788 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	RPS6KC1	Q96S38	1066 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	TCF25	Q9BQ70	676 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	RTP3	Q9BQQ7	232 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	PYM1	Q9BRP8	204 aa	Known RBP	6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	TRIM6	Q9C030	488 aa	Predicted RBP	6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	LRRC27	Q9C0I9	530 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	CRISPLD1	Q9H336	500 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	ASB7	Q9H672	318 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	PANK4	Q9NVE7	773 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	ANKFY1	Q9P2R3	1169 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	PRKAG3	Q9UGI9	489 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	DERA	Q9Y315	318 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	ATP6V1D	Q9Y5K8	247 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	HCFC2	Q9Y5Z7	792 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	F5	P12259	2224 aa		6.23	□□□□□ -1.41
CUX1-208	ENST00000485792	CACNA1I	Q9P0X4	2223 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	ESPN	B1AK53	854 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	MBTPS2	O43462	519 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	PRPF6	O94906	941 aa	Known RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CXCL14	O95715	111 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	ADH1C	P00326	375 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CNP	P09543	421 aa	Known RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	HARS	P12081	509 aa	Known RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	HOXB8	P17481	243 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	KCNA5	P22460	613 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	ME1	P48163	572 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CLCNKB	P51801	687 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CDR1	P51861	262 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	SNRPF	P62306	86 aa	Known RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CLDN10	P78369	228 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	AMPD3	Q01432	767 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	RNASEL	Q05823	741 aa	Known RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	STRN3	Q13033	797 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	SMAD4	Q13485	552 aa	Known RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	HSP90AA2P	Q14568	343 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	ARID5B	Q14865	1188 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	USP41	Q3LFD5	358 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	ZCWPW2	Q504Y3	356 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	COBLL1	Q53SF7	1204 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	HERC4	Q5GLZ8	1057 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	SPOUT1	Q5T280	376 aa	Known RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	SPATA1	Q5VX52	437 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	FUT10	Q6P4F1	479 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	VASH1	Q7L8A9	365 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	NT5DC4	Q86YG4	428 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CD302	Q8IX05	232 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	FMR1NB	Q8N0W7	255 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	TTC9B	Q8N6N2	239 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	C12orf76	Q8N812	135 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	TMEM87A	Q8NBN3	555 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CMAS	Q8NFW8	434 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	ZNF707	Q96C28	371 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	SAAL1	Q96ER3	474 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	PAGE5	Q96GU1	130 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CALR3	Q96L12	384 aa	Known RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	SPATA32	Q96LK8	384 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	KLHL5	Q96PQ7	755 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	KCTD15	Q96SI1	283 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	TMEM209	Q96SK2	561 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CLSTN3	Q9BQT9	956 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	CCDC94	Q9BW85	323 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	COLEC11	Q9BWP8	271 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	APOL5	Q9BWW9	433 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	TLE6	Q9H808	572 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	TOPORS	Q9NS56	1045 aa	Predicted RBP	6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	DMAC2	Q9NW81	257 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	PARP2	Q9UGN5	583 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	SIX4	Q9UIU6	781 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	C2CD2	Q9Y426	696 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	UBE4B	O95155	1302 aa		6.22	□□□□□ -1.41
CUX1-208	ENST00000485792	TICRR	Q7Z2Z1	1910 aa		6.21	□□□□□ -1.41
CUX1-208	ENST00000485792	CACNA1H	O95180	2353 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	LACTBL1	A8MY62	500 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	LOC730098	B7Z3J9	87 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	HNRNPDL	O14979	420 aa	Known RBP	6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	KIAA0391	O15091	583 aa	Known RBP	6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	TEX28	O15482	410 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	TBCA	O75347	108 aa	Known RBP	6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	ABLIM3	O94929	683 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	RHOBTB3	O94955	611 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	ZNF202	O95125	648 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	OAZ2	O95190	189 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	LDHA	P00338	332 aa	Known RBP	6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	POU2F2	P09086	479 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	PAX3	P23760	479 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	FSHR	P23945	695 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	TKT	P29401	623 aa	Known RBP	6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	OR1G1	P47890	313 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	ACOT2	P49753	483 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	LIG4	P49917	911 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	PMS1	P54277	932 aa	Known RBP	6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	ZP2	Q05996	745 aa		6.21	□□□□□ -1.42
CUX1-208	ENST00000485792	ELAVL2	Q12926	359 aa	Known RBP	6.21	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms