RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ZFPL1O95159 310 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 AHSGP02765 367 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 ZEB1P37275 1124 aaPredicted RBP7.55□□□□□ -1.2
USP40-213ENST00000483216 AGFG1P52594 562 aaKnown RBP7.55□□□□□ -1.2
USP40-213ENST00000483216 PSMC1P62191 440 aaKnown RBP7.55□□□□□ -1.2
USP40-213ENST00000483216 BLOC1S1P78537 153 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 SCAPQ12770 1279 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 TCF15Q12870 199 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 KLF10Q13118 480 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 FGL2Q14314 439 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 HABP2Q14520 560 aaPredicted RBP7.55□□□□□ -1.2
USP40-213ENST00000483216 ANO6Q4KMQ2 910 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 ABHD17BQ5VST6 288 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 Q6ZPA2 131 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 OVCH2Q7RTZ1 564 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 DAAM2Q86T65 1068 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 FMNL3Q8IVF7 1028 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 DDX17Q92841 729 aaKnown RBP7.55□□□□□ -1.2
USP40-213ENST00000483216 WDR11Q9BZH6 1224 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 TMEM60Q9H2L4 133 aa7.55□□□□□ -1.2
USP40-213ENST00000483216 SARS2Q9NP81 518 aaKnown RBP7.55□□□□□ -1.2
USP40-213ENST00000483216 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.55□□□□□ -1.2
USP40-213ENST00000483216 COL4A3Q01955 1670 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 CCDC195A0A1B0GUA6 201 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 TMEM191CA6NGB0 347 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 GNAI2P04899 355 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 EGR2P11161 476 aaPredicted RBP7.54□□□□□ -1.2
USP40-213ENST00000483216 PHKA1P46020 1223 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 VAV2P52735 878 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 ZNF135P52742 658 aaPredicted RBP7.54□□□□□ -1.2
USP40-213ENST00000483216 GFOD2Q3B7J2 385 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 SP5Q6BEB4 398 aaPredicted RBP7.54□□□□□ -1.2
USP40-213ENST00000483216 CLNKQ7Z7G1 428 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 COLGALT2Q8IYK4 626 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 SMOQ99835 787 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 CNPPD1Q9BV87 410 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 ARMT1Q9H993 441 aa7.54□□□□□ -1.2
USP40-213ENST00000483216 UNKLQ9H9P5 680 aaKnown RBP7.54□□□□□ -1.2
USP40-213ENST00000483216 PRAMEF33A0A0G2JMD5 474 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 E7ENX8 843 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 PRAMEF10O60809 474 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 SUN1O94901 812 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 TAP2Q03519 686 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 FHL2Q14192 279 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 ARHGAP29Q52LW3 1261 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 CRB2Q5IJ48 1285 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 KHDC1LQ5JSQ8 128 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 NPNTQ6UXI9 565 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 TMPRSS9Q7Z410 1059 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 GPR149Q86SP6 731 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 TTC8Q8TAM2 541 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 ASB10Q8WXI3 467 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 TRIB1Q96RU8 372 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 RSAD1Q9HA92 442 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 PCDHA6Q9UN73 950 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 AGAP1Q9UPQ3 857 aa7.53□□□□□ -1.2
USP40-213ENST00000483216 SLPIP03973 132 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 MYBP10242 640 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 KRT4P19013 534 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 HDCP19113 662 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 ANXA11P50995 505 aaKnown RBP7.52□□□□□ -1.21
USP40-213ENST00000483216 SOX8P57073 446 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 GPSM2P81274 684 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 EXOSC9Q06265 439 aaKnown RBP7.52□□□□□ -1.21
USP40-213ENST00000483216 DPTQ07507 201 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 GEN1Q17RS7 908 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 TAPT1Q6NXT6 567 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 C14orf80Q86SX3 495 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 USP37Q86T82 979 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 VRK3Q8IV63 474 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 KIAA0319LQ8IZA0 1049 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 POC1BQ8TC44 478 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 LRIG1Q96JA1 1093 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 SORCS2Q96PQ0 1159 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 B3GNT5Q9BYG0 378 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 KRTAP4-11Q9BYQ6 195 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 TINAGL1Q9GZM7 467 aaPredicted RBP7.52□□□□□ -1.21
USP40-213ENST00000483216 CNNM1Q9NRU3 951 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 SYBUQ9NX95 663 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 ETAA1Q9NY74 926 aa7.52□□□□□ -1.21
USP40-213ENST00000483216 ING1Q9UK53 422 aaPredicted RBP7.52□□□□□ -1.21
USP40-213ENST00000483216 GRID2IPA4D2P6 1211 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 FAM227AF5H4B4 570 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 POLRMTO00411 1230 aaKnown RBP7.51□□□□□ -1.21
USP40-213ENST00000483216 PARNO95453 639 aaKnown RBP7.51□□□□□ -1.21
USP40-213ENST00000483216 ITGAMP11215 1152 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 TGM1P22735 817 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 RPS7P62081 194 aaKnown RBP7.51□□□□□ -1.21
USP40-213ENST00000483216 DYRK1AQ13627 763 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 PPP1R32Q7Z5V6 425 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 LDLRAD3Q86YD5 345 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 LCORLQ8N3X6 602 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 NSUN7Q8NE18 718 aaKnown RBP7.51□□□□□ -1.21
USP40-213ENST00000483216 MRGPRX1Q96LB2 322 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 COQ10AQ96MF6 247 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 CYP4F11Q9HBI6 524 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 TBCCD1Q9NVR7 557 aa7.51□□□□□ -1.21
USP40-213ENST00000483216 VSTM5A8MXK1 200 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 FOXN1O15353 648 aa7.5□□□□□ -1.21
USP40-213ENST00000483216 AVPR1BP47901 424 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms