RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 KIF20AO95235 890 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 CHEK2O96017 543 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 CFIP05156 583 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 ELANEP08246 267 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 NR4A1P22736 598 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 DGCR2P98153 550 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 LRRC55Q6ZSA7 311 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 USP37Q86T82 979 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 CFAP52Q8N1V2 620 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 CACTINQ8WUQ7 758 aaKnown RBP5.16□□□□□ -1.58
USP40-204ENST00000427947 ANKS1AQ92625 1134 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 SMOQ99835 787 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 CNPPD1Q9BV87 410 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 APOL5Q9BWW9 433 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 PCGF6Q9BYE7 350 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 TRIM54Q9BYV2 358 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 LRRC27Q9C0I9 530 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 ARNT2Q9HBZ2 717 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 MED16Q9Y2X0 877 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 USP19O94966 1318 aa5.16□□□□□ -1.58
USP40-204ENST00000427947 POLRMTO00411 1230 aaKnown RBP5.15□□□□□ -1.59
USP40-204ENST00000427947 APAF1O14727 1248 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 TBX3O15119 743 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 FRS3O43559 492 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 PQBP1O60828 265 aaKnown RBP5.15□□□□□ -1.59
USP40-204ENST00000427947 DNAJB5O75953 348 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 UNC5CO95185 931 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 NDUFA10O95299 355 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 HLA-DOAP06340 250 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 BRAFP15056 766 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 BUD31P41223 144 aaPredicted RBP5.15□□□□□ -1.59
USP40-204ENST00000427947 TUBA3CQ13748 450 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 TAPT1Q6NXT6 567 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 TUBA3EQ6PEY2 450 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 ZNF783Q6ZMS7 281 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 TMEM132CQ8N3T6 1108 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 CPEB3Q8NE35 698 aaKnown RBP5.15□□□□□ -1.59
USP40-204ENST00000427947 PJA1Q8NG27 643 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 OR6B3Q8NGW1 331 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 KBTBD7Q8WVZ9 684 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 DDX17Q92841 729 aaKnown RBP5.15□□□□□ -1.59
USP40-204ENST00000427947 RNF31Q96EP0 1072 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 MRPS18AQ9NVS2 196 aaKnown RBP5.15□□□□□ -1.59
USP40-204ENST00000427947 VSX1Q9NZR4 365 aaPredicted RBP5.15□□□□□ -1.59
USP40-204ENST00000427947 KCNE5Q9UJ90 142 aa5.15□□□□□ -1.59
USP40-204ENST00000427947 CCDC195A0A1B0GUA6 201 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 CCDC194A0A1B0GVG4 234 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 MYO1FO00160 1098 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 TOR1BO14657 336 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 PMM2O15305 246 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 PLIN1O60240 522 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 VPS4BO75351 444 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 MAP4K4O95819 1239 aaPredicted RBP5.14□□□□□ -1.59
USP40-204ENST00000427947 ABHD16AO95870 558 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 GRPP07492 148 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 NBPF7P0C2Y1 421 aaPredicted RBP5.14□□□□□ -1.59
USP40-204ENST00000427947 PIM1P11309 404 aaPredicted RBP5.14□□□□□ -1.59
USP40-204ENST00000427947 MYF5P13349 255 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 LAG3P18627 525 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 EN2P19622 333 aaPredicted RBP5.14□□□□□ -1.59
USP40-204ENST00000427947 CHRM3P20309 590 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 ZFP36P26651 326 aaKnown RBP5.14□□□□□ -1.59
USP40-204ENST00000427947 ARFIP2P53365 341 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 CXADRP78310 365 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 MXRA7P84157 204 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 RESTQ13127 1097 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 FOXE3Q13461 319 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 BEAN1Q3B7T3 259 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 SPDYE7PQ495Y7 208 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 MAP9Q49MG5 647 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 B3GNTL1Q67FW5 361 aaPredicted RBP5.14□□□□□ -1.59
USP40-204ENST00000427947 SLC30A10Q6XR72 485 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 SYNE4Q8N205 404 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 FAM46DQ8NEK8 389 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 ZNF503Q96F45 646 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 APIPQ96GX9 242 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 MED15Q96RN5 788 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 TRIB1Q96RU8 372 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 ALOXE3Q9BYJ1 711 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 NRDE2Q9H7Z3 1164 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 KIAA1586Q9HCI6 787 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 SLC2A4RGQ9NR83 387 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 CPNE7Q9UBL6 633 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 OGDHLQ9ULD0 1010 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 REXO2Q9Y3B8 237 aaKnown RBP5.14□□□□□ -1.59
USP40-204ENST00000427947 PLEKHM1Q9Y4G2 1056 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 NOX1Q9Y5S8 564 aa5.14□□□□□ -1.59
USP40-204ENST00000427947 UNC119BA6NIH7 251 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 MARCH11A6NNE9 402 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 ISM1B1AKI9 464 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 BTN3A1O00481 513 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 CDKL5O76039 1030 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 PHKG2P15735 406 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 KCNA2P16389 499 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 DDX6P26196 483 aaKnown RBP eCLIP5.13□□□□□ -1.59
USP40-204ENST00000427947 PTGS2P35354 604 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 SUMO3P55854 103 aaPredicted RBP5.13□□□□□ -1.59
USP40-204ENST00000427947 POU6F2P78424 691 aaPredicted RBP5.13□□□□□ -1.59
USP40-204ENST00000427947 MC2RQ01718 297 aa5.13□□□□□ -1.59
USP40-204ENST00000427947 SLC13A2Q13183 592 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms