RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CENPCQ03188 943 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 TTC13Q8NBP0 860 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 FRMD8P1Q9BZ68 369 aaPredicted RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 THAP2Q9H0W7 228 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 DDX20Q9UHI6 824 aaKnown RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 PCDHGC3Q9UN70 934 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 GIT1Q9Y2X7 761 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 PRKAR2AP13861 404 aaKnown RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 CST5P28325 142 aaPredicted RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 MKRN4PQ13434 485 aaPredicted RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 DRP2Q13474 957 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 WDR93Q6P2C0 686 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 CRELD2Q6UXH1 353 aaPredicted RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 EIF1ADQ8N9N8 165 aaKnown RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 FEZF2Q8TBJ5 459 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 SPATA18Q8TC71 538 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 WHAMMQ8TF30 809 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 ZNF668Q96K58 619 aaPredicted RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 C11orf70Q9BRQ4 267 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 PARD6BQ9BYG5 372 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 IKZF4Q9H2S9 585 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 STIM2Q9P246 746 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 GTF2IRD1Q9UHL9 959 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 NOCTQ9UK39 431 aaKnown RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 ZNF263O14978 683 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 RPL9P32969 192 aaKnown RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 BEX3Q00994 111 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 FMO1Q01740 532 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 ZNF268Q14587 947 aaPredicted RBP8.91□□□□□ -0.98
USP54-203ENST00000418501 C1orf220Q5T0J3 134 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 DSTYKQ6XUX3 929 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 TMEM86AQ8N2M4 240 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 ZNF606Q8WXB4 792 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 KANSL3Q9P2N6 904 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 ALG6Q9Y672 507 aa8.91□□□□□ -0.98
USP54-203ENST00000418501 PTPRFP10586 1907 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 A6NNZ2 444 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 FAM193AP78312 1265 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 NNTQ13423 1086 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 TUBB8Q3ZCM7 444 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 FBXO47Q5MNV8 452 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 SESTD1Q86VW0 696 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 EFCAB13Q8IY85 973 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 RCOR2Q8IZ40 523 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 OR5B17Q8NGF7 314 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 SLC20A1Q8WUM9 679 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 CFHR5Q9BXR6 569 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 FTHL17Q9BXU8 183 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 TTC7AQ9ULT0 858 aaPredicted RBP8.9□□□□□ -0.98
USP54-203ENST00000418501 CNTN6Q9UQ52 1028 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 ZNF236Q9UL36 1845 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 M0QYV0 167 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 B4GALT5O43286 388 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 TRAPPC3O43617 180 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 BUB1BO60566 1050 aaPredicted RBP8.9□□□□□ -0.98
USP54-203ENST00000418501 PCSK1P29120 753 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 TNFSF9P41273 254 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 LHX1P48742 406 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 COPS2P61201 443 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 PPP1R7Q15435 360 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 MAPRE1Q15691 268 aaKnown RBP8.9□□□□□ -0.98
USP54-203ENST00000418501 CNGA2Q16280 664 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 PTGISQ16647 500 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 NBPF20Q3BBV1 942 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 ZNF572Q7Z3I7 529 aaPredicted RBP8.9□□□□□ -0.98
USP54-203ENST00000418501 RPAINQ86UA6 219 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 ABI1Q8IZP0 508 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 PLEKHO2Q8TD55 490 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 TRAF3IP1Q8TDR0 691 aaPredicted RBP8.9□□□□□ -0.98
USP54-203ENST00000418501 SNX27Q96L92 541 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 ZSWIM1Q9BR11 485 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 STMN4Q9H169 189 aaPredicted RBP8.9□□□□□ -0.98
USP54-203ENST00000418501 SAGE1Q9NXZ1 904 aa8.9□□□□□ -0.98
USP54-203ENST00000418501 A8MXQ7 604 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 ZRANB2O95218 330 aaKnown RBP eCLIP8.9□□□□□ -0.99
USP54-203ENST00000418501 TBC1D8O95759 1140 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 THPOP40225 353 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 HAUS1Q96CS2 278 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 TLR10Q9BXR5 811 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 PACSIN1Q9BY11 444 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 ADAMTS10Q9H324 1103 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 ST7Q9NRC1 585 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 SNTG2Q9NY99 539 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 SNX9Q9Y5X1 595 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 CDY2AQ9Y6F7 541 aa8.9□□□□□ -0.99
USP54-203ENST00000418501 GPR25O00155 361 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 TJP3O95049 919 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 ERBB2P04626 1255 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 PSMC1P62191 440 aaKnown RBP8.89□□□□□ -0.99
USP54-203ENST00000418501 CAV1Q03135 178 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 PRKCZQ05513 592 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 CCL14Q16627 93 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 ZNF365Q70YC5 407 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 SLFN11Q7Z7L1 901 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 C1orf131Q8NDD1 294 aaKnown RBP8.89□□□□□ -0.99
USP54-203ENST00000418501 PSMB7Q99436 277 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 MED10Q9BTT4 135 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 CYLDQ9NQC7 956 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 LRFN2Q9ULH4 789 aa8.89□□□□□ -0.99
USP54-203ENST00000418501 DUSP10Q9Y6W6 482 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms