RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 FAM124BQ9H5Z6 455 aaPredicted RBP15.21■□□□□ 0.03
SKA1-202ENST00000398452 GOLGA2P5Q9HBQ8 144 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 TBC1D13Q9NVG8 400 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 MIOSQ9NXC5 875 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 PLAGL2Q9UPG8 496 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 STXBP5LQ9Y2K9 1186 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 ANO9A1A5B4 782 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 KPNA7A9QM74 516 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 DLL1O00548 723 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 TRAPPC3O43617 180 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 B3GAT3O94766 335 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 GFPT2O94808 682 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 SERPING1P05155 500 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 CD58P19256 250 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 CYLC1P35663 651 aaPredicted RBP15.2■□□□□ 0.02
SKA1-202ENST00000398452 OR1G1P47890 313 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 PDE6CP51160 858 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 WDR5P61964 334 aaKnown RBP15.2■□□□□ 0.02
SKA1-202ENST00000398452 PTK2Q05397 1052 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 DCLRE1AQ6PJP8 1040 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 ZNF365Q70YC5 407 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 GSTCDQ8NEC7 633 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 APPL2Q8NEU8 664 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 CCDC42Q96M95 316 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 GUCD1Q96NT3 240 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 COLEC11Q9BWP8 271 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 XYLT2Q9H1B5 865 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 CXCL16Q9H2A7 254 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 PDCL3Q9H2J4 239 aa15.2■□□□□ 0.02
SKA1-202ENST00000398452 APOBEC3GQ9HC16 384 aaKnown RBP15.2■□□□□ 0.02
SKA1-202ENST00000398452 MYO9BQ13459 2157 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 ARHGAP6O43182 974 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 ALDH2P05091 517 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 SKILP12757 684 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 CLCNKBP51801 687 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 JAM2P57087 298 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 SOX4Q06945 474 aaPredicted RBP15.19■□□□□ 0.02
SKA1-202ENST00000398452 ARID5BQ14865 1188 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 TCTN1Q2MV58 587 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 PAN2Q504Q3 1202 aaKnown RBP15.19■□□□□ 0.02
SKA1-202ENST00000398452 FAM117BQ6P1L5 589 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 TMEM270Q6UE05 265 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 METTL23Q86XA0 190 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 SHC3Q92529 594 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 TOP1MTQ969P6 601 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 YME1L1Q96TA2 773 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.19■□□□□ 0.02
SKA1-202ENST00000398452 SNX25Q9H3E2 840 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 LUC7LQ9NQ29 371 aaKnown RBP15.19■□□□□ 0.02
SKA1-202ENST00000398452 AIPL1Q9NZN9 384 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 SCN5AQ14524 2016 aa15.19■□□□□ 0.02
SKA1-202ENST00000398452 ANK1P16157 1881 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 COL6A3P12111 3177 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 RNF225M0QZC1 329 aaPredicted RBP15.18■□□□□ 0.02
SKA1-202ENST00000398452 FOXN3O00409 490 aaPredicted RBP15.18■□□□□ 0.02
SKA1-202ENST00000398452 AKR1B10O60218 316 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 TADA2AO75478 443 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 WEE2P0C1S8 567 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 ODC1P11926 461 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 HNRNPH3P31942 346 aaKnown RBP15.18■□□□□ 0.02
SKA1-202ENST00000398452 LILRA4P59901 499 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 CDK17Q00537 523 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 UPP1Q16831 310 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 DPY19L2P1Q6NXN4 242 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 DPH6Q7L8W6 267 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 TXLNBQ8N3L3 684 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 TOP6BLQ8N6T0 577 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 KAT5Q92993 513 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 ELMO3Q96BJ8 720 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 KREMEN1Q96MU8 473 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 CASD1Q96PB1 797 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 TMEM175Q9BSA9 504 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 CISHQ9NSE2 258 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 SEPT11Q9NVA2 429 aaKnown RBP15.18■□□□□ 0.02
SKA1-202ENST00000398452 PUF60Q9UHX1 559 aaKnown RBP15.18■□□□□ 0.02
SKA1-202ENST00000398452 DSEQ9UL01 958 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 POLIQ9UNA4 740 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 FAN1Q9Y2M0 1017 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 SLC4A7Q9Y6M7 1214 aa15.18■□□□□ 0.02
SKA1-202ENST00000398452 CYB561D2O14569 222 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 PPEF2O14830 753 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 DGKIO75912 1065 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 FAM163BP0C2L3 166 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 HOXB3P14651 431 aaPredicted RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 TNFAIP3P21580 790 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 ANXA13P27216 316 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 ASPAP45381 313 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 ALDH7A1P49419 539 aaKnown RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 AFF1P51825 1210 aaKnown RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 BTG3Q14201 252 aaPredicted RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 SPA17Q15506 151 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 NAB2Q15742 525 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 FAM109BQ6ICB4 259 aaPredicted RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 COLGALT2Q8IYK4 626 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 FAM71AQ8IYT1 594 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 CCDC170Q8IYT3 715 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 RBBP8NLQ8NC74 664 aaPredicted RBP15.17■□□□□ 0.02
SKA1-202ENST00000398452 OR6B3Q8NGW1 331 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 CXorf38Q8TB03 319 aa15.17■□□□□ 0.02
SKA1-202ENST00000398452 MYLIPQ8WY64 445 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms