RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 PLD1Q13393 1074 aa16.75■□□□□ 0.27
CHMP3-202ENST00000393773 SIM2Q14190 667 aaPredicted RBP16.75■□□□□ 0.27
CHMP3-202ENST00000393773 C1orf228Q6PIY5 440 aa16.75■□□□□ 0.27
CHMP3-202ENST00000393773 PRR23CQ6ZRP0 262 aa16.75■□□□□ 0.27
CHMP3-202ENST00000393773 TTC9BQ8N6N2 239 aa16.75■□□□□ 0.27
CHMP3-202ENST00000393773 CSGALNACT1Q8TDX6 532 aa16.75■□□□□ 0.27
CHMP3-202ENST00000393773 SPIRE2Q8WWL2 714 aa16.75■□□□□ 0.27
CHMP3-202ENST00000393773 TIPINQ9BVW5 301 aa16.75■□□□□ 0.27
CHMP3-202ENST00000393773 RAB34Q9BZG1 259 aa16.75■□□□□ 0.27
CHMP3-202ENST00000393773 C2orf42Q9NWW7 574 aa16.75■□□□□ 0.27
CHMP3-202ENST00000393773 TIMM13Q9Y5L4 95 aaPredicted RBP16.75■□□□□ 0.27
CHMP3-202ENST00000393773 HELZP42694 1942 aaKnown RBP16.74■□□□□ 0.27
CHMP3-202ENST00000393773 TTC26A0AVF1 554 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 MYBPHLA2RUH7 354 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 MTMR11A4FU01 709 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 SFI1A8K8P3 1242 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 SPECC1L-ADORA2AF8WAN1 911 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 HRO43593 1189 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 U2AF2P26368 475 aaKnown RBP eCLIP16.74■□□□□ 0.27
CHMP3-202ENST00000393773 CDC25AP30304 524 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 CTHP32929 405 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 SPAG1Q07617 926 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 STRN3Q13033 797 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 GPR17Q13304 367 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 ZBTB6Q15916 424 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 CSRP2Q16527 193 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 PPM1JQ5JR12 505 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 KRT79Q5XKE5 535 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 ZPBP2Q6X784 338 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 GAREM2Q75VX8 874 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.74■□□□□ 0.27
CHMP3-202ENST00000393773 LONP2Q86WA8 852 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 LRRC3BQ96PB8 259 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 OXCT2Q9BYC2 517 aaPredicted RBP16.74■□□□□ 0.27
CHMP3-202ENST00000393773 C8orf33Q9H7E9 229 aaPredicted RBP16.74■□□□□ 0.27
CHMP3-202ENST00000393773 ATG2BQ96BY7 2078 aa16.74■□□□□ 0.27
CHMP3-202ENST00000393773 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.73■□□□□ 0.27
CHMP3-202ENST00000393773 OR6C75A6NL08 312 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 FAM189A1O60320 539 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 PRAMEF12O95522 483 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 PLS3P13797 630 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 HOXC13P31276 330 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 PRPHP41219 470 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 TNFSF9P41273 254 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 RAD51AP2Q09MP3 1159 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 DUSP4Q13115 394 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 GNL2Q13823 731 aaKnown RBP16.73■□□□□ 0.27
CHMP3-202ENST00000393773 CCINQ13939 588 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 CENPPQ6IPU0 288 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 ARID3BQ8IVW6 561 aaPredicted RBP16.73■□□□□ 0.27
CHMP3-202ENST00000393773 YAF2Q8IY57 180 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 PSMG2Q969U7 264 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 KIF12Q96FN5 646 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 ZFYVE19Q96K21 471 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 PLEKHA5Q9HAU0 1116 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 LIMCH1Q9UPQ0 1083 aa16.73■□□□□ 0.27
CHMP3-202ENST00000393773 LAD1O00515 517 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 PPEF2O14830 753 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 CLDN3O15551 220 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 GDF9O60383 454 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 CLTAP09496 248 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 CYP3A5P20815 502 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 MARCKSP29966 332 aaPredicted RBP16.72■□□□□ 0.27
CHMP3-202ENST00000393773 CNR2P34972 360 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 GUCY2FP51841 1108 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 KPNA1P52294 538 aaPredicted RBP16.72■□□□□ 0.27
CHMP3-202ENST00000393773 EPHB3P54753 998 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 HMGN5P82970 282 aaKnown RBP16.72■□□□□ 0.27
CHMP3-202ENST00000393773 DGKKQ5KSL6 1271 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 HYIQ5T013 277 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 RALGPS2Q86X27 583 aaPredicted RBP16.72■□□□□ 0.27
CHMP3-202ENST00000393773 PNMA5Q96PV4 448 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 TMEM209Q96SK2 561 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 GTSE1Q9NYZ3 720 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 UBQLN1Q9UMX0 589 aaKnown RBP16.72■□□□□ 0.27
CHMP3-202ENST00000393773 SDK1Q7Z5N4 2213 aa16.72■□□□□ 0.27
CHMP3-202ENST00000393773 ANAPC1Q9H1A4 1944 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 SOAT2O75908 522 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 TYMPP19971 482 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 HOXA6P31267 233 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 NCKAP1LP55160 1127 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 PPP2R3AQ06190 1150 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 MYBPC2Q14324 1141 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 ARHGAP29Q52LW3 1261 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 HEATR6Q6AI08 1181 aaKnown RBP16.71■□□□□ 0.27
CHMP3-202ENST00000393773 OVOS1Q6IE37 1185 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 GPIHBP1Q8IV16 184 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 FAM160A2Q8N612 972 aaPredicted RBP16.71■□□□□ 0.27
CHMP3-202ENST00000393773 ATAD1Q8NBU5 361 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 KCNN1Q92952 543 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.71■□□□□ 0.27
CHMP3-202ENST00000393773 OBP2AQ9NY56 170 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 SLC27A5Q9Y2P5 690 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 ASB3Q9Y575 518 aa16.71■□□□□ 0.27
CHMP3-202ENST00000393773 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.71■□□□□ 0.27
CHMP3-202ENST00000393773 ALDH1A3P47895 512 aa16.7■□□□□ 0.26
CHMP3-202ENST00000393773 SLC12A3P55017 1021 aa16.7■□□□□ 0.26
CHMP3-202ENST00000393773 CACNB1Q02641 598 aaPredicted RBP16.7■□□□□ 0.26
CHMP3-202ENST00000393773 PON2Q15165 354 aa16.7■□□□□ 0.26
CHMP3-202ENST00000393773 ENOX2Q16206 610 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms