RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 WDR35Q9P2L0 1181 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 NOCTQ9UK39 431 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 NAALADL1Q9UQQ1 740 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 ASB3Q9Y575 518 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 ATP8B3O60423 1300 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 T-ENOLP0DO92 83 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 KRT17Q04695 432 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 CCDC60Q8IWA6 550 aaPredicted RBP18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 FAM71AQ8IYT1 594 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 AGGF1Q8N302 714 aaeCLIP18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 ATG4AQ8WYN0 398 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 EPAS1Q99814 870 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 ANKEF1Q9NU02 776 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 ECEL1O95672 775 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 PTPRAP18433 802 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 ATP5DP30049 168 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 SFNP31947 248 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 GCLCP48506 637 aaPredicted RBP18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 WDR4P57081 412 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 GPC5P78333 572 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 TMEM132BQ14DG7 1078 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 TMED2Q15363 201 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 PARP6Q2NL67 630 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 KHDC1Q4VXA5 237 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 PHLDB2Q86SQ0 1253 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 MAP4K3Q8IVH8 894 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 MRRFQ96E11 262 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 C9orf72Q96LT7 481 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 PHTF1Q9UMS5 762 aa18.73■□□□□ 0.59
SQSTM1-202ENST00000389805 TP73O15350 636 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 P4HA2O15460 535 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 STBD1O95210 358 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 KCNA2P16389 499 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 RFX1P22670 979 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 FSTL1Q12841 308 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 STRN3Q13033 797 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 CYFIP1Q7L576 1253 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.72■□□□□ 0.593e-9■■■□□ 18.1
SQSTM1-202ENST00000389805 ZNF280CQ8ND82 737 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 HELQQ8TDG4 1101 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 MAP3K20Q9NYL2 800 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 ZNF214Q9UL59 606 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 SMAPO00193 183 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 NVLO15381 856 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 CLDN3O15551 220 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 CCND2P30279 289 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 FMO1Q01740 532 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 FOXB2Q5VYV0 432 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 KRT39Q6A163 491 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 ZC3H18Q86VM9 953 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 SLC13A5Q86YT5 568 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 DTX3LQ8TDB6 740 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 FAM213AQ9BRX8 229 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 XPNPEP1Q9NQW7 623 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 SEPT9Q9UHD8 586 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 G3BP2Q9UN86 482 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 RASA4BC9J798 803 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 HNRNPDLO14979 420 aaKnown RBP18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 RASA4O43374 803 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 SPOPO43791 374 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 RNF8O76064 485 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 TTC4O95801 387 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 RANBP1P43487 201 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 ERFP50548 548 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 SLC5A9Q2M3M2 681 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 DLK2Q6UY11 383 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 SV2AQ7L0J3 742 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 REPS2Q8NFH8 660 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 ANKRD27Q96NW4 1050 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 FAM118BQ9BPY3 351 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 MTUS1Q9ULD2 1270 aa18.72■□□□□ 0.59
SQSTM1-202ENST00000389805 ACADSP16219 412 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 C2CD6Q53TS8 623 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 RHOT2Q8IXI1 618 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 B4GALNT2Q8NHY0 566 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 LRRC8CQ8TDW0 803 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 ZNF526Q8TF50 670 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 EZH1Q92800 747 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 MAPK13O15264 365 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 CYP11B1P15538 503 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 ITGA8P53708 1063 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 IL9RQ01113 521 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 SP2Q02086 613 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 MKRN3Q13064 507 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 LBRQ14739 615 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 TAF1BQ53T94 588 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 ANGEL2Q5VTE6 544 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 MTHFD1LQ6UB35 978 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 TAS1R3Q7RTX0 852 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 CCNJLQ8IV13 435 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 SCYL3Q8IZE3 742 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 RBBP8NLQ8NC74 664 aaPredicted RBP18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 TMEM174Q8WUU8 243 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 SHC3Q92529 594 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 KIFAP3Q92845 792 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 IWS1Q96ST2 819 aa18.71■□□□□ 0.59
SQSTM1-202ENST00000389805 DOCK5Q9H7D0 1870 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 WNT7BP56706 349 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 MTERF2Q49AM1 385 aa18.7■□□□□ 0.58
SQSTM1-202ENST00000389805 OR52E8Q6IFG1 317 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms