RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CORO1CQ9ULV4 474 aaPredicted RBP17.33■□□□□ 0.36
SDC4-201ENST00000372733 SMG5Q9UPR3 1016 aaKnown RBP17.33■□□□□ 0.36
SDC4-201ENST00000372733 ZNF536O15090 1300 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 LTBP4Q8N2S1 1624 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 PIAS1O75925 651 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 NOMO3P69849 1222 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 TAF1BQ53T94 588 aaPredicted RBP17.32■□□□□ 0.36
SDC4-201ENST00000372733 HHATQ5VTY9 493 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 FAM160B2Q86V87 743 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 GPD1LQ8N335 351 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 ACSF2Q96CM8 615 aaPredicted RBP17.32■□□□□ 0.36
SDC4-201ENST00000372733 MAK16Q9BXY0 300 aaKnown RBP17.32■□□□□ 0.36
SDC4-201ENST00000372733 FOXP3Q9BZS1 431 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 NPHS2Q9NP85 383 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 TCEAL9Q9UHQ7 104 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.32■□□□□ 0.36
SDC4-201ENST00000372733 NUMBLQ9Y6R0 609 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 ZNF646O15015 1829 aaPredicted RBP17.32■□□□□ 0.36
SDC4-201ENST00000372733 TLR3O15455 904 aaKnown RBP17.32■□□□□ 0.36
SDC4-201ENST00000372733 PSMC5P62195 406 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 GRIK3Q13003 919 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 EFTUD2Q15029 972 aaKnown RBP eCLIP17.32■□□□□ 0.362e-9■■■■■ 40.6
SDC4-201ENST00000372733 ANO5Q75V66 913 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 ZNF677Q86XU0 584 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 CCDC125Q86Z20 511 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 SUPT20HQ8NEM7 779 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 CLEC4DQ8WXI8 215 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 TTC25Q96NG3 672 aa17.32■□□□□ 0.36
SDC4-201ENST00000372733 GOLGA8SH3BPF8 625 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 GOLGA8MH3BSY2 632 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 LIN7AO14910 233 aaPredicted RBP17.31■□□□□ 0.36
SDC4-201ENST00000372733 TYROBPO43914 113 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 ENTPD5O75356 428 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 HLA-DRAP01903 254 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 KRT1P04264 644 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 AOC3Q16853 763 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 LVRNQ6Q4G3 990 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 MFSD7Q6UXD7 560 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 NIPA1Q7RTP0 329 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 NLRP9Q7RTR0 991 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 USP37Q86T82 979 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 ANKMY2Q8IV38 441 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 CPXCR1Q8N123 301 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 BICD1Q96G01 975 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 MYCNP04198 464 aaPredicted RBP17.31■□□□□ 0.36
SDC4-201ENST00000372733 ICAM1P05362 532 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 MYCLP12524 364 aaPredicted RBP17.31■□□□□ 0.36
SDC4-201ENST00000372733 PIK3CAP42336 1068 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 RPL7AP62424 266 aaKnown RBP17.31■□□□□ 0.36
SDC4-201ENST00000372733 NOP14P78316 857 aaKnown RBP17.31■□□□□ 0.36
SDC4-201ENST00000372733 EAPPQ56P03 285 aaPredicted RBP17.31■□□□□ 0.36
SDC4-201ENST00000372733 C15orf39Q6ZRI6 1047 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 CEP128Q6ZU80 1094 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 MASTLQ96GX5 879 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 DENND2DQ9H6A0 471 aaPredicted RBP17.31■□□□□ 0.36
SDC4-201ENST00000372733 FEM1BQ9UK73 627 aa17.31■□□□□ 0.36
SDC4-201ENST00000372733 PTPRJQ12913 1337 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 WDR91A4D1P6 747 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 PDIA2Q13087 525 aaKnown RBP17.3■□□□□ 0.36
SDC4-201ENST00000372733 TDRD10Q5VZ19 366 aaKnown RBP17.3■□□□□ 0.36
SDC4-201ENST00000372733 ALLCQ8N6M5 410 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 ZNF75CPQ92670 426 aaPredicted RBP17.3■□□□□ 0.36
SDC4-201ENST00000372733 SLITRK1Q96PX8 696 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 YIPF3Q9GZM5 350 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 C12orf65Q9H3J6 166 aaKnown RBP17.3■□□□□ 0.36
SDC4-201ENST00000372733 ZFATQ9P243 1243 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 ZFP69BQ9UJL9 534 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 ZC3H11AO75152 810 aaKnown RBP eCLIP17.3■□□□□ 0.36
SDC4-201ENST00000372733 LINGO3P0C6S8 592 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 ACO1P21399 889 aaKnown RBP17.3■□□□□ 0.36
SDC4-201ENST00000372733 ADRA1DP25100 572 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 CAP2P40123 477 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 GAD2Q05329 585 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 MAPK6Q16659 721 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 PLEKHG4Q58EX7 1191 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 WDR44Q5JSH3 913 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 PLEKHA7Q6IQ23 1121 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 TMEM270Q6UE05 265 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 NLRX1Q86UT6 975 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 DEFB129Q9H1M3 183 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 MRPL47Q9HD33 250 aaKnown RBP17.3■□□□□ 0.36
SDC4-201ENST00000372733 TBC1D22BQ9NU19 505 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 SENP1Q9P0U3 644 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 PSMC3IPQ9P2W1 217 aaPredicted RBP17.3■□□□□ 0.36
SDC4-201ENST00000372733 DCTN4Q9UJW0 460 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 LRRC42Q9Y546 428 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 PCDHB4Q9Y5E5 795 aa17.3■□□□□ 0.36
SDC4-201ENST00000372733 COL2A1P02458 1487 aaPredicted RBP17.29■□□□□ 0.36
SDC4-201ENST00000372733 IFNB1P01574 187 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 PDHA1P08559 390 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 KRT4P19013 534 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 GNA15P30679 374 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 SLC18A1P54219 525 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 LMNB2Q03252 620 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 OVGP1Q12889 678 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 BRDTQ58F21 947 aaPredicted RBP17.29■□□□□ 0.36
SDC4-201ENST00000372733 ANO7Q6IWH7 933 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 RFWD3Q6PCD5 774 aa17.29■□□□□ 0.36
SDC4-201ENST00000372733 MTDHQ86UE4 582 aaKnown RBP17.29■□□□□ 0.36
SDC4-201ENST00000372733 TAAR1Q96RJ0 339 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms