RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SGSM1Q2NKQ1 1148 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 C1orf53Q5VUE5 145 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 SFMBT2Q5VUG0 894 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 RBM23Q86U06 439 aaKnown RBP9.85□□□□□ -0.83
USP4-202ENST00000351842 SLC30A5Q8TAD4 765 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 UBA3Q8TBC4 463 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 GPR152Q8TDT2 470 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 CCDC51Q96ER9 411 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 GPR62Q9BZJ7 368 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 NIF3L1Q9GZT8 377 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 SDCBP2Q9H190 292 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 MYH10P35580 1976 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 A0A0U1RQJ8 604 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 CLDN5O00501 218 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 MFAP3LO75121 409 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 CFHP08603 1231 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 TKTP29401 623 aaKnown RBP9.85□□□□□ -0.83
USP4-202ENST00000351842 NDST1P52848 882 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 NAP1L1P55209 391 aaKnown RBP9.85□□□□□ -0.83
USP4-202ENST00000351842 TUSC3Q13454 348 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 PCBP1Q15365 356 aaKnown RBP eCLIP9.85□□□□□ -0.83
USP4-202ENST00000351842 ASIC2Q16515 512 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 TAS1R1Q7RTX1 841 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 TC2NQ8N9U0 490 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 APPL2Q8NEU8 664 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 ATRIPQ8WXE1 791 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 ARNTL2Q8WYA1 636 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 APBB2Q92870 758 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 TMEM169Q96HH4 297 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 PPP1R10Q96QC0 940 aaKnown RBP9.85□□□□□ -0.83
USP4-202ENST00000351842 ERGIC2Q96RQ1 377 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 SNX25Q9H3E2 840 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 SIX2Q9NPC8 291 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 GTF3C4Q9UKN8 822 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 C2CD2Q9Y426 696 aa9.85□□□□□ -0.83
USP4-202ENST00000351842 MRPL42Q9Y6G3 142 aaKnown RBP9.85□□□□□ -0.83
USP4-202ENST00000351842 ABHD14A-ACY1A0A1B0GW23 586 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 SPDYE4A6NLX3 237 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 ZNF623O75123 536 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 SOAT2O75908 522 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 ARHGEF15O94989 841 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 ASS1P00966 412 aaKnown RBP9.84□□□□□ -0.83
USP4-202ENST00000351842 TNNT1P13805 278 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 CTNNB1P35222 781 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 STAT1P42224 750 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 MFAP3P55082 362 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 SDHAF4Q5VUM1 108 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 MICALL1Q8N3F8 863 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 ACRBPQ8NEB7 543 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 TOP1MTQ969P6 601 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 CASD1Q96PB1 797 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 TMEM209Q96SK2 561 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 BAG1Q99933 345 aaPredicted RBP9.84□□□□□ -0.83
USP4-202ENST00000351842 C17orf80Q9BSJ5 609 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 MED10Q9BTT4 135 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 XYLT2Q9H1B5 865 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 HAUS4Q9H6D7 363 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 ABHD10Q9NUJ1 306 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 L1RE1Q9UN81 338 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 EOMESO95936 686 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 CXCL10P02778 98 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 SKIP12755 728 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 CCDC130P13994 396 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 RGS7P49802 495 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 GFPT1Q06210 699 aaPredicted RBP9.84□□□□□ -0.83
USP4-202ENST00000351842 GRIK3Q13003 919 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 NFIL3Q16649 462 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 LLGL2Q6P1M3 1020 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 PALB2Q86YC2 1186 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 ADGRF2Q8IZF7 708 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 ZNF710Q8N1W2 664 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 RBBP8NLQ8NC74 664 aaPredicted RBP9.84□□□□□ -0.83
USP4-202ENST00000351842 OR8K1Q8NGG5 319 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 LMO3Q8TAP4 145 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 GANQ9H2C0 597 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 SLC38A7Q9NVC3 462 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP4-202ENST00000351842 F8VZ95 297 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 ATMINO43313 823 aaPredicted RBP9.84□□□□□ -0.83
USP4-202ENST00000351842 GJB5O95377 273 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 SCP2P22307 547 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 GTF2H1P32780 548 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 EIF4A3P38919 411 aaKnown RBP9.84□□□□□ -0.83
USP4-202ENST00000351842 BCL7CQ8WUZ0 217 aaPredicted RBP9.84□□□□□ -0.83
USP4-202ENST00000351842 CCDC42Q96M95 316 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 PLEKHA5Q9HAU0 1116 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 LZTFL1Q9NQ48 299 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 DDX43Q9NXZ2 648 aaKnown RBP9.84□□□□□ -0.83
USP4-202ENST00000351842 ITGA11Q9UKX5 1188 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 PYCARDQ9ULZ3 195 aa9.84□□□□□ -0.83
USP4-202ENST00000351842 CPB1P15086 417 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 RNASE9P60153 205 aaKnown RBP9.83□□□□□ -0.84
USP4-202ENST00000351842 PTK2Q05397 1052 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 KYAT1Q16773 422 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 UPP1Q16831 310 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 SOWAHAQ2M3V2 549 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 PSRC1Q6PGN9 363 aaPredicted RBP9.83□□□□□ -0.84
USP4-202ENST00000351842 KCNT2Q6UVM3 1135 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 ALKAL1Q6UXT8 129 aa9.83□□□□□ -0.84
USP4-202ENST00000351842 HERC6Q8IVU3 1022 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms