RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 SYNCRIPO60506 623 aaKnown RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 P4HBP07237 508 aaKnown RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 ZRANB3Q5FWF4 1079 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 SLC25A24Q6NUK1 477 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 BNIPLQ7Z465 357 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 C19orf18Q8NEA5 215 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 DNAJC9Q8WXX5 260 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 RFFLQ8WZ73 363 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 GLMNQ92990 594 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 MAGEB10Q96LZ2 347 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 PNKPQ96T60 521 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 THUMPD3Q9BV44 507 aaKnown RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 MYLK2Q9H1R3 596 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 SEC31BQ9NQW1 1179 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 RHBDL2Q9NX52 303 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 TLR7Q9NYK1 1049 aaKnown RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 TMCC3Q9ULS5 477 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 ZHX2Q9Y6X8 837 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 TADA2AO75478 443 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 AGTP01019 485 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 CYP19A1P11511 503 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 GPC1P35052 558 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 SPRP35270 261 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 COX10Q12887 443 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 SETD3Q86TU7 594 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 CYFIP2Q96F07 1278 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 MMP19Q99542 508 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 KLHL25Q9H0H3 589 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 STN1Q9H668 368 aaKnown RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 BATF3Q9NR55 127 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 RAB6BQ9NRW1 208 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 MRPL39Q9NYK5 338 aaKnown RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 AGO2Q9UKV8 859 aaKnown RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 FAM25AB3EWG3 89 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 FAM25CB3EWG5 89 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 FAM25GB3EWG6 89 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 PLEKHA8P1O95397 391 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 PTPN7P35236 360 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 SLC1A1P43005 524 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 NUP107P57740 925 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 RSBN1Q5VWQ0 802 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 SLC44A2Q8IWA5 706 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 ZNF786Q8N393 782 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 FANCEQ9HB96 536 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 UBAP1Q9NZ09 502 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 XPO7Q9UIA9 1087 aaKnown RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 ATP6V1B1P15313 513 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 CHI3L1P36222 383 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 SYDE1Q6ZW31 735 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 RCOR2Q8IZ40 523 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 OR8H2Q8N162 312 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 RNFT2Q96EX2 444 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 OLFM1Q99784 485 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 SERHL2Q9H4I8 314 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 COPS7BQ9H9Q2 264 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 SERHLQ9NQF3 203 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 RNF146Q9NTX7 359 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 UGGT1Q9NYU2 1555 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 PDZK1P1A8MUH7 402 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 B2RBV5 119 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 EEF2KO00418 725 aaKnown RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 PRRG1O14668 218 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 SNPHO15079 494 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 TRIM24O15164 1050 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 FOXP2O15409 715 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 YWHAQP27348 245 aa10.84□□□□□ -0.67
CLIP1-201ENST00000302528 ZNF200P98182 395 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 WDR36Q8NI36 951 aaKnown RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 ZNF512Q96ME7 567 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 AVENQ9NQS1 362 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 PSMC3IPQ9P2W1 217 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 ZMYND8Q9ULU4 1186 aaPredicted RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 CFAP65Q6ZU64 1925 aaKnown RBP10.84□□□□□ -0.67
CLIP1-201ENST00000302528 PDE5AO76074 875 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 GUCY1A2P33402 732 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 NFIL3Q16649 462 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 RESP18Q5W5W9 173 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 C4orf33Q8N1A6 199 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 RNPC3Q96LT9 517 aaKnown RBP10.83□□□□□ -0.67
CLIP1-201ENST00000302528 FAM20AQ96MK3 541 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 AIFM3Q96NN9 605 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 PUS7LQ9H0K6 701 aaKnown RBP10.83□□□□□ -0.67
CLIP1-201ENST00000302528 WWOXQ9NZC7 414 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 CTNNAL1Q9UBT7 734 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 AMACRQ9UHK6 382 aa10.83□□□□□ -0.67
CLIP1-201ENST00000302528 PIN4Q9Y237 131 aaKnown RBP10.83□□□□□ -0.67
CLIP1-201ENST00000302528 PVALEFA0A1B0GWK0 134 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 SCP2P22307 547 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 CYP2C19P33261 490 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 SNX30Q5VWJ9 437 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 CYFIP1Q7L576 1253 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 RTKN2Q8IZC4 609 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 STKLD1Q8NE28 680 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 MOSPD2Q8NHP6 518 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 C18orf8Q96DM3 657 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 PPP1R2P1Q96PQ5 205 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 NMRK1Q9NWW6 199 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 POTECB2RU33 542 aa10.83□□□□□ -0.68
CLIP1-201ENST00000302528 VWA5AO00534 786 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms