RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 RFFLQ8WZ73 363 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 TTC39BQ5VTQ0 682 aaPredicted RBP12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 NEK5Q6P3R8 708 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 GLYCTKQ8IVS8 523 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 MMGT1Q8N4V1 131 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 TTC13Q8NBP0 860 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 ELMO2Q96JJ3 720 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 GOLPH3Q9H4A6 298 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 RABL2AQ9UBK7 228 aaPredicted RBP12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 SNTNA6NMZ2 147 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 APOL1O14791 398 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 GCLMP48507 274 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 OSTNP61366 133 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 GALNT8Q9NY28 637 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 EMC3Q9P0I2 261 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 SPEF1Q9Y4P9 236 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 STON1Q9Y6Q2 735 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 UTYO14607 1347 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 NR5A2O00482 541 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 FAM20BO75063 409 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 PIK3R1P27986 724 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 TMEM270Q6UE05 265 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 ATL2Q8NHH9 583 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 FAM45AQ8TCE6 357 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 GCNAQ96QF7 691 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 PIF1Q9H611 641 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 USP4Q13107 963 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 MIGA2Q7L4E1 593 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 SLC9A2Q9UBY0 812 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 PLCL2Q9UPR0 1127 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 ATMINO43313 823 aaPredicted RBP12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 SASH3O75995 380 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 KCNJ6P48051 423 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 RPS6KA3P51812 740 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 LPIN1Q14693 890 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 VWA5AO00534 786 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 KLK7P49862 253 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 IL5RAQ01344 420 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 GCKRQ14397 625 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 NAALADL2Q58DX5 795 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 YME1L1Q96TA2 773 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 TOR3AQ9H497 397 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 ZNF224Q9NZL3 707 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 ITFG2Q969R8 447 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 PGBD4Q96DM1 585 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 KRT84Q9NSB2 600 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 H2AFY2Q9P0M6 372 aaPredicted RBP12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 E9PBE3 544 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 EIF2AK2P19525 551 aaKnown RBP12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 USF2Q15853 346 aaPredicted RBP12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 ARL13BQ3SXY8 428 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 KLHL3Q9UH77 587 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 SERPINH1P50454 418 aaKnown RBP12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 EIF3EP60228 445 aaKnown RBP12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 SLC35G2Q8TBE7 412 aa12.26□□□□□ -0.45
SHROOM3-201ENST00000296043 HIBADHP31937 336 aaKnown RBP12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 CENPAP49450 140 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 BBS7Q8IWZ6 715 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 GNPATO15228 680 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 FAM69CQ0P6D2 419 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 COASYQ13057 564 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 OR6Y1Q8NGX8 325 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 INTS13Q9NVM9 706 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 KCNN4O15554 427 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 GRM1Q13255 1194 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 GTF2H3Q13889 308 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 CENPLQ8N0S6 344 aaPredicted RBP12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 USP13Q92995 863 aaPredicted RBP12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 CARD14Q9BXL6 1004 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 COMMD3-BMI1R4GMX3 469 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 CCR3P51677 355 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 KCNJ2P63252 427 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 SHROOM1Q2M3G4 852 aaPredicted RBP12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 C6orf183Q5T699 404 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 PPP4R3CPQ6ZMV5 832 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 SETD3Q86TU7 594 aaPredicted RBP12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 A0A1W2PP64 1363 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 CARTPTQ16568 116 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 KIZQ2M2Z5 673 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 HACE1Q8IYU2 909 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 PDCD10Q9BUL8 212 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 A0A1B0GTH6 734 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 M0QZ92 97 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 APRTP07741 180 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 MMRN1Q13201 1228 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 C3orf62Q6ZUJ4 267 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 TSPAN14Q8NG11 270 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 TASP1Q9H6P5 420 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 CYP21A2P08686 494 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 PHACTR1Q9C0D0 580 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 EHD4Q9H223 541 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 C12orf4Q9NQ89 552 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 EIF2S1P05198 315 aaKnown RBP12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 IREB2P48200 963 aaKnown RBP12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 MROH9Q5TGP6 573 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 PARVAQ9NVD7 372 aa12.25□□□□□ -0.45
SHROOM3-201ENST00000296043 CNOT3O75175 753 aaKnown RBP12.24□□□□□ -0.45
SHROOM3-201ENST00000296043 CCNCP24863 283 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms